Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8595 98.7 8e-15 seq46494 95.1 1e-13 >seq8595 Length=520 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||||| ||||||| ||| ||||| || ||||| | ||| || |||| ||| Sbjct 35 ACGCACATTCAATAGTTTTCCGCGAAGAGGAAACACACCATACTGATCACGCCCAACAAC 94 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 ||||||| || ||| || | ||||||||||| ||||| ||||||||||| | ||| Sbjct 95 TGCCAGTCCAGCCACTGCTAAGGCCTTAGCTGAATCACCTTCTGTCAAAATAAGCGAACA 154 Query 429409 TT 429410 || Sbjct 155 TT 156 >seq46494 Length=576 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||||| ||||||| ||| ||||| || ||||| | || || |||| ||| Sbjct 576 ACGCACATTCAATAGTTTTCCGCGAAGAGGAAACACACCATACTGGTCACGCCCAACAAC 517 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 ||||||| || ||| | | |||||||||||| ||||| ||||||||||| | ||| Sbjct 516 GGCCAGTCCAGCCACTGCCAGGGCTTTAGCTGAATCACCTTCTGTCAAAATAAGCGAACA 457 Query 429409 TT 429410 || Sbjct 456 TT 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023030560562260