Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq110124 259 9e-64 seq76529 228 2e-54 seq94487 140 6e-28 seq98218 98.7 2e-15 seq66249 86.0 1e-11 >seq110124 Length=2655 Score = 259 bits (286), Expect = 9e-64 Identities = 506/741 (68%), Gaps = 20/741 (3%) Strand=Plus/Minus Query 212912 GACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTC 212971 ||| ||| ||| || || | ||||| | | | ||| | ||| || ||||| ||||| Sbjct 818 GACGATCGTGAACTCGCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTC 759 Query 212972 GATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAG 213031 |||| ||||||||| || || ||||| || || || || |||||||| |||||||| Sbjct 758 GATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAAGCCGTCGGCATGGGGGCCACCAG 699 Query 213032 GAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCGA-AGCTCTGCCCAGTCCCA 213088 || ||| | || |||||||| | || | | | || ||| ||||||| ||| Sbjct 698 CAGCGAGTTGCGCAGTCCGTGCTTG---ATCACGTCCTCCTTGAGCGTAGCCCAGTTCCA 642 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 | || ||| | | || ||| ||||||||| ||||| |||||||| ||||| Sbjct 641 CATACCCGAC--GACGGGGTG----ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCT 588 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 | || ||||||| | | ||| ||||| | |||||||| | ||| |||| Sbjct 587 AGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCAATCTCCATCGACGT 528 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 || || ||| ||| |||||||||| || || || | | ||||||||| | ||||| Sbjct 527 CTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTC 468 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328 | | ||| | ||||| | ||| | || || || |||||||| || || || Sbjct 467 GCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACC 408 Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGT 213387 ||||| | ||| | || ||| |||||| | || ||| | |||||| ||||| || Sbjct 407 AATGGGGCGGTGACGCATGTTGGACTTGCGCGC-CTCGATGACGGGGTAGTAGTTGACGT 349 Query 213388 CGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGAT 213447 |||||| |||||| ||||| |||||| |||| ||||| || | || | || || | Sbjct 348 CGATGACCTTGTTCAGGTTACGGGTGACCACCTTGGTCACCTCATACAACTTCTGGTAGT 289 Query 213448 TGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAA 213507 |||| || || |||| ||| |||| |||||| || | |||| |||||| | Sbjct 288 TGAAAACT------CCTTCCTCCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACA 235 Query 213508 CGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGA 213567 | |||||||| | | ||||||||||||| ||| ||| | ||||||| | |||| Sbjct 234 CAGCCACCTCGTCCGGCGACGTGTACTCCATGACCTCACAGCATAAGTTGCTGGAGCGGA 175 Query 213568 TGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGG 213627 | ||||| |||||||| ||||| ||||| |||||| | |||||||| | ||| ||| Sbjct 174 TCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGG 115 Query 213628 GGGACCCGGTCTCTAGCTGGG 213648 | || ||||| | ||||| Sbjct 114 GCACTCCCGTCTCGATCTGGG 94 >seq76529 Length=2445 Score = 228 bits (252), Expect = 2e-54 Identities = 456/672 (68%), Gaps = 14/672 (2%) Strand=Plus/Plus Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| || || ||||| || || || || |||||||| |||||||| || Sbjct 1109 CTCGTTGTTGCCGAGGATCTGGGCCGTTGAAGCCGTCGGCATGGGGGCCACCAGCAGCGA 1168 Query 213038 GTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGA 213097 ||| | || ||||||| | | | | | || ||||||| ||| |||| Sbjct 1169 GTTGCGCAGCCCGTGCTTGACCACGTCCTGTTTGAGGGTAGCCCAGTTCCA-----CAGA 1223 Query 213098 CAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCT 213157 | | | || | ||| ||||||||| ||||| |||||||| ||||| | || Sbjct 1224 CCCGACGACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGCGA 1282 Query 213158 GCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGC 213217 ||||||| | | ||| ||||| | |||||||| | ||| |||| || || ||| Sbjct 1283 GCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTCCATCGACGTCTCCATGGC 1342 Query 213218 AGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA 213277 ||| |||||||||| ||||| || | | ||||||||| | |||| | | ||| Sbjct 1343 AGCAAAGTAGATGGTCTCAAAGATGTTCTTGTTGAGCTCCCGAGCCTTCTCGCTCTCGAA 1402 Query 213278 GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCT 213337 | ||||| | ||| | || || || ||||| || || || |||||||| | Sbjct 1403 CGCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGAACGCCAATACCGATGGGACG 1462 Query 213338 GTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCT 213396 ||| | || ||| |||||| | || ||| || |||||| ||||| |||||||| || Sbjct 1463 GTGACGCATGTTGGACTTGCGCGC-CTCGATCACGGGGTAGTAGTTGACGTCGATGACCT 1521 Query 213397 TGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGT 213456 |||| | |||||||||| |||| ||||| || | | || | || || ||||| || Sbjct 1522 TGTTTAAGTTGCGGGTGACCACCTTGGTCACTTCGTACAACTTCTGGTAGTTGAAAACT- 1580 Query 213457 AGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCT 213516 || |||| ||| |||| ||||| || | || | |||||| || ||||||| Sbjct 1581 -----CCTTCCTCCACGAACTTGGGCAGCGCCACAGACGCTAAGTTGCACACAGCCACCT 1635 Query 213517 CCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | | ||||||||||| | ||| ||| | ||||||| | ||||| ||||| | Sbjct 1636 CGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGA 1695 Query 213577 GGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 ||||||| ||||| ||||| |||||||| |||||||| | ||| |||| || | Sbjct 1696 GGTTCTGCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTACAACATAAAGGGCACTCCCG 1755 Query 213637 TCTCTAGCTGGG 213648 |||| | ||||| Sbjct 1756 TCTCGATCTGGG 1767 >seq94487 Length=3660 Score = 140 bits (154), Expect = 6e-28 Identities = 337/506 (67%), Gaps = 8/506 (2%) Strand=Plus/Minus Query 48174 CGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGA 48233 |||| ||||||| || |||||||||| || | || ||||||||||| || | || Sbjct 550 CGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGA 491 Query 48234 AAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG 48293 | ||||| |||||||||||||||||||| || || ||||| || | ||| | | | Sbjct 490 ACGAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACG 431 Query 48294 AAG-CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC 48352 | | | || | | | ||| |||||||||| || |||||||| | || || Sbjct 430 ACGACACTCGCGGGT-TGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGG 372 Query 48353 ATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---A 48409 ||||| || ||||| || | || | | ||| || ||| | || || | Sbjct 371 ATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCA 312 Query 48410 GTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAG 48469 |||||||| | ||||| ||| ||||| | ||||| || |||||||| || |||||| Sbjct 311 ATGAGCAGC---GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGAAAACCGTAG 255 Query 48470 AAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTG 48529 ||| | |||||| ||||||||| || || ||| || ||| ||||| || Sbjct 254 AAGCAGCGGGCCTCCGGCACCTGCACCTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTC 195 Query 48530 ACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTG 48589 || || || || ||||| |||||||| || || || || | ||| |||||||| Sbjct 194 ACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTA 135 Query 48590 TGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAG 48649 | || || |||| ||| | ||| | ||||||||| || || | |||||| Sbjct 134 TCCGTCAGGTTCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAG 75 Query 48650 AAGGACGCGAGTGCTTTTTTGTACAT 48675 || || || || || |||||||| Sbjct 74 AACGAGGCCTCCGCCTTCTTGTACAT 49 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || |||||| Sbjct 811 AAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGC 752 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || | ||| ||||| ||||||||||| ||| Sbjct 751 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCC 692 Query 48257 TCCACTGCCGCGAACGC 48273 ||||| || |||||||| Sbjct 691 TCCACGGCTGCGAACGC 675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 181/265 (68%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 48411 TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGA 48470 |||||||| | |||| ||| ||||| | ||||| || ||||||||||| ||||||| Sbjct 3240 TGAGCAGC---GAATACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGA 3184 Query 48471 AGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGA 48530 || | |||||| |||||||||||| || ||| || ||| ||||| || | Sbjct 3183 AGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCA 3124 Query 48531 CTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 | || || || || || |||||||| || || || || | ||| |||||||||| Sbjct 3123 CGATGCCGTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGT 3064 Query 48591 GGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 || || |||| ||| | ||| | ||||||||| || || | ||||||| Sbjct 3063 CCGTCAGGTTCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGA 3004 Query 48651 AGGACGCGAGTGCTTTTTTGTACAT 48675 | || || || || |||||||| Sbjct 3003 ACGAGGCTTCCGCCTTCTTGTACAT 2979 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 48174 CGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGA 48233 |||| ||||||| || |||||||||| || | || ||||||||||| || | || Sbjct 3660 CGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGA 3601 Query 48234 AAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | ||||| ||||||||||| |||||||| || |||||||| Sbjct 3600 ACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGC 3561 >seq98218 Length=3782 Score = 98.7 bits (108), Expect = 2e-15 Identities = 181/265 (68%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 48411 TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGA 48470 |||||||| | |||| ||| ||||| | ||||| || ||||||||||| ||||||| Sbjct 2324 TGAGCAGC---GAATACACCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGA 2380 Query 48471 AGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGA 48530 || | |||||| ||||||||||| || ||| || ||| ||||| || | Sbjct 2381 AGCAGCGGGCCTCCGGTACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCA 2440 Query 48531 CTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 | || || || ||||| |||||||| || || || || | ||| |||||||||| Sbjct 2441 CGATGCCGTCACTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGT 2500 Query 48591 GGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 || || |||| ||| | ||| | ||||||||| || || | ||||||| Sbjct 2501 CCGTCAGGTTCGCCCAGTCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGA 2560 Query 48651 AGGACGCGAGTGCTTTTTTGTACAT 48675 | || || || || |||||||| Sbjct 2561 ACGAGGCCTCCGCCTTCTTGTACAT 2585 >seq66249 Length=1340 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 48174 CGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGA 48233 |||| ||||||| || |||||||||| || | || ||||||||||| || | || Sbjct 1 CGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGA 60 Query 48234 AAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | ||||| ||||||||||| |||||||| || |||||||| Sbjct 61 ACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGC 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930153269788160