Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq94487 163 5e-35 seq98218 127 4e-24 seq110124 111 3e-19 seq66249 95.1 2e-14 seq110277 84.2 4e-11 >seq94487 Length=3660 Score = 163 bits (180), Expect = 5e-35 Identities = 348/513 (68%), Gaps = 10/513 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 43 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 102 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 103 CACGACCTCAAGGACTGGGCGAACCTGACGGATAACGAGCGGTTCTTCATCAAGCACGTG 162 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 163 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 222 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | || |||||| ||||||| || ||||||||||| ||||| |||||||| || Sbjct 223 AATGAGGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTTCAGATCGCCATCGAGAAC 282 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| |||||||| | ||| || || |||||||| | || | | ||| Sbjct 283 ATCCACTCGGAGGTGTA---CTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 339 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | |||||||||| || || | | |||| ||| |||| ||| Sbjct 340 AAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGG 399 Query 25837 GCCATGAAGTGGATCAA-CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| ||| | || || | | ||| ||||| ||| | || ||||| Sbjct 400 GCGCTCAAGTGGTGCAACCCGCGAGTG-TCGTCGTACCCGGAGCGTCTGCTGGCGTTTGC 458 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 || |||||||||||||| ||| || ||||| ||| ||||||||||||||||| || Sbjct 459 AGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGC 517 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 || |||||| || ||| ||| || |||| Sbjct 518 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACG 550 Score = 123 bits (136), Expect = 5e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| || ||| |||||| ||||| ||| | || |||| Sbjct 2973 TGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 3032 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 3033 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 3092 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 3093 CTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 3152 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 3153 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 3212 Query 25720 GTGCACTCTGAGGTGTAT 25737 | ||||| ||||||||| Sbjct 3213 ATCCACTCGGAGGTGTAT 3230 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 ||||| ||| | || || || || |||||||| ||||| ||| || ||||| ||| | Sbjct 663 GAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTTCTTCTCGGGCTCGTTCTGCT-C 721 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||||||| || || |||||| || ||| ||| || |||||||| || Sbjct 722 CATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGAT 781 Query 25995 CAGCAGGGACGAGGGTCTCCACA 26017 |||| | |||||||| | |||| Sbjct 782 CAGCCGTGACGAGGGCATGCACA 804 >seq98218 Length=3782 Score = 127 bits (140), Expect = 4e-24 Identities = 185/259 (71%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 2591 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 2532 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 2531 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 2472 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| ||| || || ||||||||||| ||| | || |||| | Sbjct 2471 CTGGCCTTCTTCGCTGCCAGTGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 2412 Query 25660 AGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | ||||||||| ||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 2411 AATGAAGTGCAGGTACC-GGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCGATCGAGAA 2353 Query 25719 TGTGCACTCTGAGGTGTAT 25737 | ||||| ||||||||| Sbjct 2352 CATCCACTCGGAGGTGTAT 2334 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 |||||| |||| ||||| |||| |||||||||| |||||||| | |||||| | | Sbjct 1734 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 1675 Query 26227 AGACTCTACAGTACGCCTA--ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | |||||| ||| | |||||||||||| ||||| | || ||| || | || | Sbjct 1674 AAGATCTACA--ACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCA 1617 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||| || || ||| | || ||||| || Sbjct 1616 AGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1583 >seq110124 Length=2655 Score = 111 bits (122), Expect = 3e-19 Identities = 302/460 (66%), Gaps = 38/460 (8%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-----CG 221473 || ||| ||| |||||||||||| ||||| |||||||||| | ||||| | Sbjct 524 CATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCT 465 Query 221474 GGAGAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| | | || ||| || || ||| |||| || || ||||| || || || Sbjct 464 CTCGAACGCGTAGTTCATG---AGGAT---AAACGCGTCCGCGAGGCCCTGGACGCCAAT 411 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||| ||||| | ||| | | ||||||| | ||| || ||||| || ||||||| Sbjct 410 ACCAATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATGACGGGGTAGTAGTTGAC 351 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| ||||| | |||| || || |||||| || |||||||| Sbjct 350 GTCGATGACCTTGTTCAGGTTACGGGTGACCACCTTGGTCACCTCATACAACTTCTGGTA 291 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGG----GCAA 221708 ||||| ||||| | || | |||| || ||||| || | Sbjct 290 GTTGAA----AACTC-----CTTCCT---------CCACGAAC----TTAGGCAGCGCCA 253 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | |||| ||| ||||| |||||||||||| || |||| |||| ||| | Sbjct 252 CAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATGACCTCACAGC 193 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | | ||||||| | ||| || || |||| | || || |||||||| ||||| |||| Sbjct 192 ATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGT 133 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGC 221868 ||||||| | ||||||||| | || ||||| | ||| || Sbjct 132 CCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGC 93 Score = 100 bits (110), Expect = 5e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| |||| |||||| |||||||||||| |||||||| ||||| Sbjct 782 GTACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGA 723 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || |||||||| ||||||||||| ||||||||||||| Sbjct 722 AGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGTCCG 680 >seq66249 Length=1340 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| || ||| |||||| ||||| ||| | || |||| Sbjct 508 TGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 449 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 448 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 389 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 388 CTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 329 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | ||||||||| ||||||| || ||||||||||||||||| || Sbjct 328 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGC 279 >seq110277 Length=6173 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 |||||| |||| ||||| |||| |||||||||| |||||||| | ||| || | | Sbjct 5543 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTAGGTGTGTCG 5484 Query 26227 AGACTCTACAGTACGCCTA--ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | |||||| ||| | |||||||||||| ||||| | || ||| || | || | Sbjct 5483 AAGATCTACA--ACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCA 5426 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||| || || ||| | || ||||| || Sbjct 5425 AGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927469250514560