Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq94487 104 3e-17 seq66249 100 3e-16 >seq94487 Length=3660 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCGCTCCTTCGCCGAG 65079 ||||||| ||| | ||||| | || |||| ||| | ||| ||| || | | | ||| Sbjct 607 AGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG-TCGTACCCGGAG 665 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || |||||||||||||||||||| || || |||||| | || Sbjct 666 CGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATC 725 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 726 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGC 785 Query 65200 CGAGATGAGGG 65210 || || ||||| Sbjct 786 CGTGACGAGGG 796 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 310 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 369 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| || | ||| ||| Sbjct 370 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCAACCCGCGAGTGTCG 429 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | ||||| || | |||||||| |||||||| ||||||||||| || || Sbjct 430 -TCGTACCCGGAGCGTCTGCTGGCGTTTGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTC 488 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||||||| ||||| ||||||| || Sbjct 489 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 548 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || ||| | ||||||| ||| | ||||| | || |||| ||| Sbjct 3468 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 3527 Query 65056 ACAA-AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | ||| ||| || | | | ||||| || | ||||| || |||||||||||||| Sbjct 3528 CCGCGAGTGTCG-TCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTT 3586 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| ||||| Sbjct 3587 CTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCT 3646 Query 65175 ATGCTTCTCAAA 65186 ||||||| || Sbjct 3647 GAGCTTCTCGAA 3658 >seq66249 Length=1340 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || ||| | ||||||| ||| | ||||| | || |||| ||| Sbjct 193 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 134 Query 65056 ACAA-AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | ||| ||| || | | | ||||| || | ||||| || |||||||||||||| Sbjct 133 CCGCGAGTGTCG-TCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTT 75 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| ||||| Sbjct 74 CTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCT 15 Query 65175 ATGCTTCTCAAA 65186 ||||||| || Sbjct 14 GAGCTTCTCGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595686125165120