Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq95857 96.9 1e-14 seq113048 87.8 5e-12 seq22197 87.8 5e-12 seq114003 84.2 6e-11 >seq95857 Length=2020 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || | || |||||| |||||||| || || | ||| || ||||| |||||||| Sbjct 842 CCGTGCGAGACCAGACAATCGCGCTCCATCTCTCCCATACGCAGGCCACCTTCGCGAGCA 901 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 902 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAGCGCGAGTGGATC 961 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 962 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGGCCGATGAAGAT 1014 >seq113048 Length=2632 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 410481 TTATGTGCCCGCG--TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGG 410538 |||||||| |||| || ||||||||||||||| |||||||| ||||||| ||||||| Sbjct 1151 TTATGTGCGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGG 1092 Query 410539 GTTCGAGTCCCG 410550 |||||||||||| Sbjct 1091 GTTCGAGTCCCG 1080 >seq22197 Length=1518 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 410481 TTATGTGCCCGCG--TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGG 410538 |||||||| |||| || ||||||||||||||| |||||||| ||||||| ||||||| Sbjct 1096 TTATGTGCGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGG 1155 Query 410539 GTTCGAGTCCCG 410550 |||||||||||| Sbjct 1156 GTTCGAGTCCCG 1167 >seq114003 Length=2754 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 1766 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 1708 Query 410554 T-GGGTAAtttttttaattt 410572 | | ||| |||| || |||| Sbjct 1707 TCGCGTACTTTTATTCATTT 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469583457233738