Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq102828 118 1e-21 seq96335 109 5e-19 seq88141 109 5e-19 >seq102828 Length=2266 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 1394 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCA 1335 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || ||||| || Sbjct 1334 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1275 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 1274 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 1215 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| |||||| ||||| |||| |||| || ||| Sbjct 1214 ATTCAGAAGGAGTCGACGCTACACCTGGTGCTGCGTCTGCGTGGTGGC 1167 >seq96335 Length=3561 Score = 109 bits (120), Expect = 5e-19 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 868 ATGCAGATCTTCGTGAAGACNNTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 927 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 928 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 987 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | | || || || ||| Sbjct 988 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGCGACTACAAC 1047 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| ||||||| || Sbjct 1048 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||||||||| ||||| || || || || || || || || ||| ||||||| || || Sbjct 721 CAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGC 780 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || ||||| ||||| | | | || || || ||||| || ||||| ||||| || Sbjct 781 AAGCAGCTTGAGGACGGGCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTG 840 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| ||||| |||| ||||||| ||| Sbjct 841 CACCTGGTGCTGCGTCTGCGCGGTGGC 867 >seq88141 Length=1707 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 736 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 795 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || ||||| || Sbjct 796 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 855 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||| ||||| | | || || || ||| Sbjct 856 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || || ||||| |||| Sbjct 916 ATTCAGAAGGAGTCGACGCTGCATCTGGTGCTGCG 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449231335396720