Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq96335 131 1e-25 seq102828 127 1e-24 seq88141 125 5e-24 seq52299 100 2e-16 >seq96335 Length=3561 Score = 131 bits (144), Expect = 1e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||| |||||||| | || ||||||||| ||||| ||||| Sbjct 1097 TTTCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 1038 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||||| | || || || ||||| || ||||||||||| || |||||||| || Sbjct 1037 CTCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 978 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | || ||||| |||||| | ||||| || | ||| Sbjct 977 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 918 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || || ||||| ||||| | ||||| || |||||||||||| Sbjct 917 ACGTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 89.7 bits (98), Expect = 3e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || ||||| | || Sbjct 852 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTC 793 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 792 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 733 Query 34885 GTTTATTTTTTG 34896 | || ||||| Sbjct 732 CTGGATCTTTTG 721 >seq102828 Length=2266 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| ||||| || |||| | || Sbjct 1182 CAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 1241 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 1242 CTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 1301 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 1302 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACGTCGAGCGTGATCGT 1361 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||| || ||||||||||| Sbjct 1362 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | || ||||||||||||||| ||||| || |||| | || Sbjct 948 CAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 889 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| |||| | ||||||||||| Sbjct 888 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 829 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || |||| || || || Sbjct 828 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGT 769 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || ||||| || |||||||||||| Sbjct 768 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 735 >seq52299 Length=3408 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| || |||| | || Sbjct 648 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 589 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 588 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325222531555406