Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq102828 95.1 8e-15 seq88141 89.7 3e-13 seq96335 82.4 5e-11 >seq102828 Length=2266 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||||| || ||| || || |||||||| ||| Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1227 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || |||| |||||||| || |||| Sbjct 1228 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1287 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || || | | | ||| | | ||| | ||||| Sbjct 1288 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCTGACGGCTCCAC 1346 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 ||| | ||||||||| || || || | ||| || || |||||||||||| |||| |||| Sbjct 1347 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATACTTGGAGTGT 1405 >seq88141 Length=1707 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| || || ||| || || |||||||| ||| || ||||| |||| || Sbjct 945 CACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 886 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| ||||||||| || |||| | || || ||||| Sbjct 885 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 826 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || || | | | ||| | | ||| | |||||||||| ||||||||| | Sbjct 825 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCT 767 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||| || || ||||||||||| Sbjct 766 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq96335 Length=3561 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || |||| ||||||||| || |||| Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || || | | | ||| | | ||| | ||||| Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 916 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || | || || || ||||||||||| Sbjct 915 GTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328229383678080