Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq96931 109 5e-19 seq68828 109 5e-19 seq16837 109 5e-19 >seq96931 Length=2169 Score = 109 bits (120), Expect = 5e-19 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || ||| || |||| ||| ||||| Sbjct 900 CTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTTGACGGGGAAGTCCTC--GGCCGCG 843 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 842 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 783 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| ||||| | |||||||||||| ||||||||||| Sbjct 782 GTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 723 Query 5518 T 5518 | Sbjct 722 T 722 >seq68828 Length=4007 Score = 109 bits (120), Expect = 5e-19 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || ||| || |||| ||| |||||| Sbjct 986 CTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTTAACTGGGAAGTCCTC--GGCCGAG 929 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 928 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCAATCACGCCGGCGCCC 869 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| || || | |||||||||||| ||||||||||| Sbjct 868 GTGTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 809 Query 5518 T 5518 | Sbjct 808 T 808 >seq16837 Length=2220 Score = 109 bits (120), Expect = 5e-19 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || ||| || |||| ||| ||||| Sbjct 1589 CTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTTGACGGGGAAGTCCTC--GGCCGCG 1646 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 1647 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 1706 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| ||||| | |||||||||||| ||||||||||| Sbjct 1707 GTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 1766 Query 5518 T 5518 | Sbjct 1767 T 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447148025198640