Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq86700 286 4e-72 seq72444 257 2e-63 seq76103 255 7e-63 seq57059 235 6e-57 >seq86700 Length=3918 Score = 286 bits (316), Expect = 4e-72 Identities = 463/652 (71%), Gaps = 13/652 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| ||||||||||| || ||||| || || || | ||| ||||| || || Sbjct 2168 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2109 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || | || || | || |||| || ||||||||| || || Sbjct 2108 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2050 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || | ||| || Sbjct 2049 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCC 1990 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| |||||||| | || || Sbjct 1989 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 1930 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || ||| | | || | Sbjct 1929 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTCGTGCGCAGCTTGT 1871 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 |||||| | |||||||||||||||||||| |||| | | | ||| |||| | Sbjct 1870 GAATAACCTCGGTGAGCTGGTCCACGCCCTGGCCAGTGTAG-TCGGCGTGCATGTCCGTG 1812 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| ||||||||||||| | ||||||||||||||| || || || |||||||| ||| Sbjct 1811 TACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC-AACTTC 1753 Query 147337 CTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | | | | || || | | | ||| |||| | ||||| | | ||||||||||| Sbjct 1752 CCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAGATGTG 1693 Query 147396 CA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 | ||| | || | ||| | | |||| || | ||||||||| ||||||| Sbjct 1692 GATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCT 1634 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 ||||| || || | ||| ||||| | |||||| || |||| |||||| | ||||| Sbjct 1633 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTGTCCC 1574 Query 147512 TCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 |||| ||| | ||| | || || || |||||||| ||||| ||||| Sbjct 1573 TCAGACTGAACCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGT 1522 >seq72444 Length=2747 Score = 257 bits (284), Expect = 2e-63 Identities = 430/608 (71%), Gaps = 13/608 (2%) Strand=Plus/Plus Query 146964 GTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCG 147022 ||| ||||| || || ||||| || || |||| || || |||| || | || |||| || Sbjct 455 GTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCA-GTCGCGTAAGCAACG 513 Query 147023 AGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCT 147082 ||||||||| || ||||| || || || || |||||||| |||| | |||||||| || Sbjct 514 CGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAACGCTGGTACATCT 573 Query 147083 GGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCG 147142 |||| || | ||| |||||||||||||| |||||||| | |||||||||||||| |||| Sbjct 574 GGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCG 633 Query 147143 CCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGG 147201 |||| | || ||||| || ||||| ||||| | ||| | ||| | | | || || Sbjct 634 CCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGA 692 Query 147202 TTCCTCTTAATCTCTTCGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTT 147260 || | | || || |||||| || | ||||||||||||||||| || |||| | Sbjct 693 TTTGTGCGCAGCTTGTCAATAACCTCAGC-GAGCTGGTCCACGCCCTGACCAGTGTAG-T 750 Query 147261 TGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCC 147319 | | ||| |||| |||| |||||||||| || | ||||||||||||||| ||||| | Sbjct 751 CGGCGTGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACTGGTC 810 Query 147320 CCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCG 147378 | |||||||| ||| | | | | || || | | | ||| |||| | || || Sbjct 811 CAAGGTCGCC-AACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCA 869 Query 147379 TGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGG 147438 | | ||||||||||| | |||| | ||| | | |||| ||| | | Sbjct 870 TTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTG 929 Query 147439 ATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGG 147498 |||||||| |||||||||||| || || | ||| ||||| | |||||| || |||| Sbjct 930 ATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAC 989 Query 147499 GGGAAC---TGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCC 147555 |||||| | ||||||||| | | | ||| | || || || |||||||| ||| Sbjct 990 GGGAACACGTTGTCCCTCAGACTGAAGCGCATCTGCGCTCCGAAGACCGACAGCGTCCCC 1049 Query 147556 GTGCCCGT 147563 || ||||| Sbjct 1050 GTTCCCGT 1057 >seq76103 Length=1730 Score = 255 bits (282), Expect = 7e-63 Identities = 456/652 (70%), Gaps = 13/652 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| |||||||| || || ||||| || || || | ||| ||||| || || Sbjct 1069 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCGCCA 1128 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || || | || | ||||||| || ||||||||| || || Sbjct 1129 GGCTTCAGCCCACTCACCTGCGCTACAA-GTCGCGTGAGCAACGCGTAGCTGGCAATATT 1187 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 || || || || || |||||||| |||| | |||||||| ||||||||| | ||| || Sbjct 1188 AAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCGCC 1247 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| || ||||| || || Sbjct 1248 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGTGCCATCTTATTGAGATC 1307 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | ||| || ||| | | || | Sbjct 1308 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGCTC-GGATTCGTGCGCAGCTTGT 1366 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 || ||| ||||||||||||||||| || |||| | | | || |||| | Sbjct 1367 GAATGACCTCGGCGAGCTGGTCCACGCCCTGACCAGTGTAG-TCGGCGTTCATGTCCGTG 1425 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| |||||||||| || | ||||||||||||||| || || || |||||||| ||| Sbjct 1426 TACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC-AACTTC 1484 Query 147337 CTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | | | | || || | | | ||| |||| ||||||| | | ||||||||||| Sbjct 1485 CCGCGACTGCAGTCCTCGACTGTCCAGATACTCTCGGGACCCATTGCCGTCCCAGATGTG 1544 Query 147396 CA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 | ||| | || | ||| | | |||| || | ||| ||||| ||||||| Sbjct 1545 GATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCACCACTGATAAACCACAGCAGCT 1603 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 ||||| || || | ||| ||||| | |||||| || |||| |||||| | ||||| Sbjct 1604 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTGTCCC 1663 Query 147512 TCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 |||| | | | ||| | || || || |||||||| ||||| ||||| Sbjct 1664 TCAGACTGAAGCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGT 1715 >seq57059 Length=1150 Score = 235 bits (260), Expect = 6e-57 Identities = 307/414 (74%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| ||||||||||| || ||||| || || || | ||| ||||| || || Sbjct 700 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCGCCA 759 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || |||| || | || |||| | ||||||||| || || Sbjct 760 GGCTTCAGCCCACTCACCTGCGCTACCA-GTCGCGTAAGCAATGCGTAGCTGGCGATATT 818 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || | ||| || Sbjct 819 GAACGGCACGCCAAGTCCCATGTCAGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCC 878 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| || || || | |||||||||||||| |||||||| | || || Sbjct 879 GTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 938 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || || | | || | Sbjct 939 CGCCGGATTCCACGCCGACAGCACAATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 997 Query 147218 CGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCAC 147275 | |||||| || | ||||||||||||||||| || ||||| || | ||| |||| Sbjct 998 CAATAACCTCAGC-GAGCTGGTCCACGCCCTGACCAGTGTAGTCTG-CATGCATGTCCGT 1055 Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 |||| |||||||||| || | ||||||||||||||| || || || |||||||| Sbjct 1056 GTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582623898033600