Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq87625 89.7 7e-13 >seq87625 Length=4707 Score = 89.7 bits (98), Expect = 7e-13 Identities = 247/379 (65%), Gaps = 0/379 (0%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| ||||| || ||||| ||||| || ||| | || ||||| ||| | ||| Sbjct 3883 TCTACCAAGCATCGACGAGTGAATTGTACGGCAAGGTGCGAGCCACACCGCAGGACGAAG 3942 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 || || ||| | || ||||| || || || || || || | | | | ||||| || Sbjct 3943 AGACTCCGTTCCATCCGCGATCACCCTACGGTGTCGCGAAGCAGTTCGCTTTTTGGAGTG 4002 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | |||| | | || || || ||| ||| | || |||||||||||||| | Sbjct 4003 TCGTGAACCATCGCGAAGCCTACGGCATGTTTGCCGTGAACGGGATTCTATTCAACCACG 4062 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 | || || || || || ||||| || || ||||| || | | | |||| Sbjct 4063 AAAGCCCCCGGCGTGGACCAACCTTCGTCACTCGCAAGATCACCCGAGCTGTTGTGCGTA 4122 Query 161553 TTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 || || | || | || | || || | | || || || || | | |||||| |||| Sbjct 4123 TTCGTGCTGGCATTGAGAAGTGCCTCTTTGTGGGGAACCTCGACGCGAAACGAGACTGGG 4182 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATG 161672 | || ||| ||||| |||||| |||||| ||| | ||||| || ||||| |||| Sbjct 4183 GCCACGCTCGCGACTACGTGGAGTGCATGTGGCGCATGCTTCAACACGATACTCCGGATG 4242 Query 161673 ACTATGTGATTGCCACAGG 161691 | | ||| |||| ||||| Sbjct 4243 ATTTTGTTGTTGCTACAGG 4261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728848629007120