Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq94487 89.7 6e-13 seq100347 87.8 2e-12 seq66249 87.8 2e-12 >seq94487 Length=3660 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| || ||| || || || || ||||||| || || |||||||| || |||||| Sbjct 796 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 737 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| || || |||||||||||||||||||| || ||| Sbjct 736 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAAC 677 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAACCATTTCATTGCCCATTT 122855 || | || || || | | | || ||| ||| | || |||| || | ||||| | Sbjct 676 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 618 Query 122856 CGCCTTCTTCT 122866 ||| ||||||| Sbjct 617 CGCTTTCTTCT 607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 122701 TTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAAT 122760 || ||||||| || || |||||||| || |||||||| | ||| | || | |||||| Sbjct 548 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 489 Query 122761 GACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || ||||||||||| |||||||| |||||||| | || || || | | | || Sbjct 488 GAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACGA- 430 Query 122821 CGAGACT-TTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||| ||| | | |||| || | ||||| | ||| ||||||| | ||| || | Sbjct 429 CGACACTCGCGGGTTGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 370 Query 122880 AGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 || | |||||| | | || | ||| || | ||||||| ||||| ||||||| Sbjct 369 CGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 122701 TTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAAT 122760 || ||||||| || || |||||||| || |||||||| | ||| | || | |||||| Sbjct 3658 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 3599 Query 122761 GACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || |||||||||||||||||||| || ||||| | || || || | | | || Sbjct 3598 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 3540 Query 122821 CGAGACT-TTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||| ||| | || |||| || | ||||| | ||| ||||||| | ||| || | Sbjct 3539 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 3480 Query 122880 AGTTTGGATGGC 122891 || | |||||| Sbjct 3479 CGTATCGATGGC 3468 >seq100347 Length=3819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2142 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2083 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 2082 CCGGTAGGAGCTT 2070 >seq66249 Length=1340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 122701 TTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAAT 122760 || ||||||| || || |||||||| || |||||||| | ||| | || | |||||| Sbjct 3 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 62 Query 122761 GACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || |||||||||||||||||||| || ||||| | || || || | | | || Sbjct 63 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 121 Query 122821 CGAGACT-TTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||| ||| | || |||| || | ||||| | ||| ||||||| | ||| || | Sbjct 122 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 181 Query 122880 AGTTTGGATGGC 122891 || | |||||| Sbjct 182 CGTATCGATGGC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627101931710400