Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq94487 125 9e-24 seq66249 114 2e-20 >seq94487 Length=3660 Score = 125 bits (138), Expect = 9e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||| ||| || || |||||||||| ||| || |||||||| || |||||| Sbjct 796 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 737 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || ||||| ||||||||||| |||||||| |||||| Sbjct 736 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAAC 677 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 130212 || | |||||||| | | || || ||| | || ||||||| | |||||| || Sbjct 676 GCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 618 Query 130213 CGCCTTTTTCT 130223 ||| || |||| Sbjct 617 CGCTTTCTTCT 607 Score = 114 bits (126), Expect = 2e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 130058 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 130117 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3658 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 3599 Query 130118 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| ||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 3598 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 3540 Query 130178 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || ||| | || ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 3539 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 3480 Query 130237 GGTCTGGATCGC 130248 || | ||| || Sbjct 3479 CGTATCGATGGC 3468 Score = 111 bits (122), Expect = 2e-19 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 130058 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 130117 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 548 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 489 Query 130118 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| ||||||||||| |||||||| || ||||| | |||||||| | | || Sbjct 488 GAGCCCGAGAAGAAGATGCCCTCCACGGCTGCAAACGCCAGCAGACGCTCCGGGTACGA- 430 Query 130178 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || ||| | | ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 429 CGACACTCGCGGGTTGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 370 Query 130237 GGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 130296 || | ||| || | || | | ||| || | | ||| ||||||||| | || || Sbjct 369 CGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 310 Query 130297 GAG 130299 ||| Sbjct 309 GAG 307 >seq66249 Length=1340 Score = 114 bits (126), Expect = 2e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 130058 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 130117 |||||||||| ||| || |||||||| || |||||||| | |||||| || | || || Sbjct 3 TTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAC 62 Query 130118 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| ||||||||||| |||||||| |||||||| | |||||||| | | || Sbjct 63 GAGCCCGAGAAGAAGATACCCTCCACGGCTGCGAACGCCAGCAGACGCTCCGGGTACGA- 121 Query 130178 CGGGACT-TTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || ||| | || ||||||| | |||||| ||||| || |||| | |||||||| Sbjct 122 CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGAT 181 Query 130237 GGTCTGGATCGC 130248 || | ||| || Sbjct 182 CGTATCGATGGC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617519343851440