Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq94487 111 2e-19 seq66249 96.9 4e-15 seq95307 82.4 9e-11 >seq94487 Length=3660 Score = 111 bits (122), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAGTCG-CGTTCCTTTGCTGA 94805 ||||||||| | ||||| | ||||||| || | | |||| ||| || | || Sbjct 609 AAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC----CGGA 664 Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| || | || || || || ||||||||||||||||| || || |||||| | || Sbjct 665 GCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCAT 724 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 | |||||||||||||| || |||||||| || || ||||||| |||||||| ||| Sbjct 725 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAG 784 Query 94926 TCGTGACGAGGG 94937 ||||||||||| Sbjct 785 CCGTGACGAGGG 796 Score = 107 bits (118), Expect = 2e-18 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 307 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 366 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| | | | | Sbjct 367 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCAACCCGCGAGTG 426 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || ||||| || ||||| ||||||||||| Sbjct 427 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTTGCAGCCGTGGAGGGCATCTTCTTCTC 482 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 483 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 542 Query 94908 CTCCAACG 94915 ||| |||| Sbjct 543 CTCGAACG 550 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || | |||||| | | ||||||||| | ||||| | ||||||| || Sbjct 3468 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 3527 Query 94783 AC---AAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 94838 | | |||| ||| || | ||||| || | || || || || |||||||| Sbjct 3528 CCGCGAGTGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTAT 3583 Query 94839 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 94898 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 3584 CTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 3643 Query 94899 TCTCTGCTTCTCCAACG 94915 || ||||||| |||| Sbjct 3644 CCTGAGCTTCTCGAACG 3660 >seq66249 Length=1340 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || | |||||| | | ||||||||| | ||||| | ||||||| || Sbjct 193 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 134 Query 94783 AC---AAAGTCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 94838 | | |||| ||| || | ||||| || | || || || || |||||||| Sbjct 133 CCGCGAGTGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCCGTGGAGGGTAT 78 Query 94839 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 94898 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 77 CTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 18 Query 94899 TCTCTGCTTCTCCAACG 94915 || ||||||| |||| Sbjct 17 CCTGAGCTTCTCGAACG 1 >seq95307 Length=11489 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || ||||| | ||||||||||| |||| ||| | ||||| |||| ||||| | || Sbjct 10114 TTACCACGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 10173 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGAT-TGTGC 169467 |||| ||||| || || || || || || | ||| || || || | | | | | || Sbjct 10174 GCGACGGTCTTGGCGGAATCTCCTTCCGTCAGGATCAGAGTGCA-GTCCTTGCTCTTCGC 10232 Query 169468 CGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAA 169511 |||||| || ||||| |||||||||| || || || ||||||| Sbjct 10233 CGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCAGTAA 10276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582397034499760