Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq110790 141 3e-28 seq80400 120 9e-22 seq88141 116 1e-20 seq106371 91.5 4e-13 seq38399 91.5 4e-13 seq94700 87.8 5e-12 seq92487 87.8 5e-12 seq92121 87.8 5e-12 seq59010 87.8 5e-12 seq86187 86.0 2e-11 seq115434 84.2 7e-11 seq113787 84.2 7e-11 >seq110790 Length=2449 Score = 141 bits (156), Expect = 3e-28 Identities = 775/1223 (63%), Gaps = 18/1223 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || |||| ||| ||||| || ||||| || || Sbjct 1970 GGCATTGATCTGGGCACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGATCGCGTGGAG 1911 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | || || || || ||||| || || || || || Sbjct 1910 ATCATCGCGAATGACCAGGGCAACCGCACCACCCCGTCGTACGTGGCCTTCACGGATACC 1851 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| |||||| | || || || |||| ||| || | | || ||||| Sbjct 1850 GAGCGTCTGATCGGTGATGCGGCCAAGAACCAAGTGGCTATGAACGCGCACAACACGGTG 1791 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||||| ||||| || || || | | || | ||| | || || || | Sbjct 1790 TTTGATGTCAAGCGCCTYATCGGSCGYAAGTTCACGGACCCAGAAGTGCAGTCGGACATC 1731 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT-GAGGTTGA 349503 || || | || || | || || ||| || || | | | | ||| | Sbjct 1730 AAGCACTGGCCGTTCAAAGTGACTCGTGGCC-CGGAGAACAAGCCTCAAGTCGTGGTGCA 1672 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || |||||| || || || || ||||| | | | Sbjct 1671 GTTCAAGGGCGAGTCCAAGACG-TTCCAACCCGAGGAGATCTCGTCCATGGTGCTGATCA 1613 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || || || || || || | || | ||| | |||| || | || | Sbjct 1612 AGATGCGCGAGATCGCCGAGGCGTACATCGGCAAGCAAGTGAAGAATGCCGTGGTGACGG 1553 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || || ||||| || || | ||||| || || ||||| || ||| || || | Sbjct 1552 TGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCTACGAAAGACGCCGGCGCTATCGCTG 1493 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 || | |||||||| | || || || || || || ||||| || ||||| || || | | Sbjct 1492 GGCTGAATGTTCTGCGTATCATCAACGAGCCGACGGCTGCTGCCATTGCCTACGGTTTGG 1433 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | | ||| | || | || || |||||| | || || || || |||| Sbjct 1432 ACAAGAAGGGCGGC---GAACACAACGTGCTGATCTTTGATCTGGGCGGCGGAACGTTTG 1376 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 | || || || || || | ||||| || || || || || || || || || || || | Sbjct 1375 ACGTCTCGCTCCTTACGATCGAAGAAGGCATCTTCGAGGTGAAGGCCACCGCAGGCGACA 1316 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| || || ||||| || ||| | || | | || || | || || | Sbjct 1315 CGCACTTGGGTGGCGAGGACTTTGACAACCGTTTGGTCGAGTACTTCGTGACCGAGTTCA 1256 Query 349923 AGCGTCAAGCTAA--AATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| |||| || || ||| | | ||| | | |||||||| || || | || Sbjct 1255 AGCG-CAAG-TACCGAAAGGATCTGTCTGTGAATTCGCGTGCAATGCGCCGTCTCCGTAC 1198 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 ||||| || || || ||||| | | || | | | ||| | | | | || || || Sbjct 1197 GGCGTGCGAGCGCGCAAAGCGGACGCTGTCCACGTCAGCGCAAGCGTATCTGGAGATCGA 1138 Query 350041 TTCTCTTGCTG-ATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAAT 350099 ||| ||| || | || | || ||| || | ||||| ||||||||||| || || Sbjct 1137 TTCG-TTGTTGGACGGTATCGACTTCAACTCGACCATTACKCGTGCTCGGTTCGAGGATC 1079 Query 350100 TATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 | || | || | || | || ||||| ||||||| | || || || | | Sbjct 1078 TGTGCAACGAGTTCTTCCGCAAGACGATGGACCCTGTGGCGCAGGTGTTGCGGGACTCGA 1019 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | |||| || | || | | || ||||| | || || || || || ||||| || | Sbjct 1018 AGCTGTCGAAGAGCCAAGTGAACGAGATAGTTCTGGTCGGAGGGTCGACTCGTATCCCGA 959 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAAT 350278 |||| || ||||| | || || || || ||||| | | ||| || || || || Sbjct 958 AAGTGCAGCAGTTGTTGATGGACTTCTTCAACGGCAAGGGGCTGTTCAAG-TCGATCAAC 900 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAG 350338 || || ||||| || || |||||||| | || ||||| |||| | ||| ||| | Sbjct 899 CCGGACGAAGCAGTCGCCTATGGTGCCACCGTGCAGGCCGCTATCCTCAGTGGCAATGAC 840 Query 350339 AGTTC--TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 || || ||| | ||||| |||| || || || | || || |||||||| || Sbjct 839 TCGTCAGCCAAGTTGCAGGATCTGCTACTGCTGGACGTGGCCCCGCTGTCGCTTGGGTTG 780 Query 350396 GAAACTTCTGGTGAAGTAATGAC 350418 || || |||||| ||| ||||| Sbjct 779 GAGACCGCTGGTGGAGTCATGAC 757 >seq80400 Length=3249 Score = 120 bits (132), Expect = 9e-22 Identities = 349/533 (65%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 ||||| ||||| || ||||| || || || | |||| ||||| || || || || || Sbjct 2246 GGTGGCGGTACCTTCGATGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAG 2305 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 || ||||||||||| || || || ||||| || || || || || ||||| || || Sbjct 2306 GCCACTGCTGGTGACACGCACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTGGACCAC 2365 Query 349907 TTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAAT 349965 || | || || ||||| ||||| | || || || || | | || | Sbjct 2366 TTCACGCAGGAGTTCAAGCG-CAAGCACCGCAAGGACATCACGGAGAACCAGCGCGCTCT 2424 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 ||||| || | ||||| || || |||||||||||| | | || || | |||| | Sbjct 2425 CCGTCGTCTGCGGACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGC 2484 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 | ||||| ||||| ||||| ||||||| || ||| || | || || ||||| Sbjct 2485 TTACATTGAGATTGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGC 2544 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAA 350143 ||| || || || |||| || | | ||| || ||||| || ||||| || Sbjct 2545 TCGTTTCGAGGA--CATGTGCGGCGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAG 2602 Query 350144 GTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 || | || || || | ||||| | ||| | | || || || | || ||||| Sbjct 2603 GTCCTCCGTGACGCTAAGCTCTCCAAGAGCCAGGTCCACGAGGTCGTCCTGGTCGGTGGC 2662 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT 350263 || || ||||| || || || || ||| | || || || || || || ||||| || || Sbjct 2663 TCCACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCC 2722 Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || || || ||||| |||||||| || |||||| | || ||||| Sbjct 2723 AACAAGTCGATCAACCCTGATGAGGCTGTTGCCTACGGTGCTACCGTCCAGGC 2775 >seq88141 Length=1707 Score = 116 bits (128), Expect = 1e-20 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || ||||| || || ||||| || ||||| || | Sbjct 970 TTTAGTTTCCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGT 911 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || ||||| || || ||||||||||| ||||| ||||| | Sbjct 910 AGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGT 851 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGAT 140681 | || || || || || || ||||| || ||| || || || || || ||||| || || Sbjct 850 CGGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTGACGTTGTCGATCGAGTCCGAC 792 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| || | ||||| || || || || || || || |||||||| Sbjct 791 GGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq106371 Length=1857 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || || | || ||||| || || || || || Sbjct 344 GGTATTGATCTGGGCACGACGTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTGGAG 285 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||||||||| ||| | || || || || ||||| || || || || || Sbjct 284 ATCATCGCCAATGATCAAGGCAACCGCACCACCCCGTCGTACGTGGCCTTCACGGATACC 225 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || ||| | || || || |||| ||| || | | || ||||| Sbjct 224 GAGCGTCTGATCGGCGATGCGGCCAAGAACCAAGTGGCTATGAACGCGCACAACACGGTG 165 Query 349385 TTTGATGCTAAGCGACTTATTGG 349407 ||||||| ||||| || || || Sbjct 164 TTTGATGTCAAGCGCCTCATCGG 142 >seq38399 Length=510 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 262 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 203 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 202 CCCTGCTTCTCCA 190 >seq94700 Length=1974 Score = 87.8 bits (96), Expect = 5e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 235873 GATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAG 235932 |||| |||| | ||| ||||||||| |||| ||||||| ||||||||| || |||||| Sbjct 1594 GATG-CGTTGAGTATCCGGGGATGTATCTCAAATGGTAGAGCGCTCGCTTAGCGTGCGAG 1536 Query 235933 AGGTACCGGGATCAAAACCCAGCATCTCCA 235962 |||||| |||||| | |||| || |||||| Sbjct 1535 AGGTACAGGGATCGATACCCTGCTTCTCCA 1506 >seq92487 Length=5329 Score = 87.8 bits (96), Expect = 5e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 235873 GATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAG 235932 ||||| ||| | ||| ||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 5328 GATGT-GTTGAGTATCCAGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAG 5270 Query 235933 AGGTACCGGGATCAAAACCCAGCATCTCCA 235962 |||||| |||||| | ||| || |||||| Sbjct 5269 AGGTACAGGGATCGATACCGTGCTTCTCCA 5240 >seq92121 Length=11130 Score = 87.8 bits (96), Expect = 5e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 235892 GGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACC 235951 |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | ||| Sbjct 8952 GGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATACC 8893 Query 235952 CAGCATCTCCA 235962 | || |||||| Sbjct 8892 CTGCTTCTCCA 8882 >seq59010 Length=2475 Score = 87.8 bits (96), Expect = 5e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 235892 GGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACC 235951 |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | ||| Sbjct 78 GGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATACC 19 Query 235952 CAGCATCTCCA 235962 | || |||||| Sbjct 18 CTGCTTCTCCA 8 >seq86187 Length=1752 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||| ||||||||||||||||||||||||| | Sbjct 168 GTGGGATTTGAACCCACGAGTGCGAACACAGTGGAACTTGAGTCTACCCCCTTAGACCGC 109 Query 74548 TCGGGCA 74554 ||||||| Sbjct 108 TCGGGCA 102 >seq115434 Length=8635 Score = 84.2 bits (92), Expect = 7e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 235873 GATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAG 235932 ||||| ||| | ||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 6303 GATGT-GTTGAGTATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAG 6245 Query 235933 AGGTACCGGGATC 235945 |||||| |||||| Sbjct 6244 AGGTACAGGGATC 6232 >seq113787 Length=4879 Score = 84.2 bits (92), Expect = 7e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 235892 GGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACC 235951 |||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | ||| Sbjct 1187 GGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGGACAGGGATCGACACC 1246 Query 235952 CAGCATCTCCA 235962 | || |||||| Sbjct 1247 CTGCTTCTCCA 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512954322424622