Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq110124 185 1e-41 seq76529 150 2e-31 seq88141 140 4e-28 seq96335 129 7e-25 seq102828 120 3e-22 seq99580 100 3e-16 seq107323 96.9 4e-15 seq49943 96.9 4e-15 seq94487 91.5 2e-13 seq59841 89.7 6e-13 seq17899 86.0 7e-12 >seq110124 Length=2655 Score = 185 bits (204), Expect = 1e-41 Identities = 465/695 (67%), Gaps = 24/695 (3%) Strand=Plus/Minus Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 |||| ||| | ||||| ||||| | | ||||||||| ||||||||||| ||||| Sbjct 781 TACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAA 722 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501 ||||||||||| ||| | |||| ||| || || ||||| |||||||| | | ||||| Sbjct 721 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGTCCGTGCTTGATCACGTCCTCC 662 Query 80502 ----GCGCAAATCTGA-CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 ||| | | | ||| | | | | | ||| ||||| ||||||||||| || Sbjct 661 TTGAGCGTAGCCCAGTTCCACATACC--CGACGACGGGGTGACGCCCCACATGTCGAACT 604 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 | |||||||||| || || || ||| |||||||||||||||||| ||||| Sbjct 603 GGAAGATGCCCTTGCTAGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGG 544 Query 80615 CCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 | | ||| ||| |||||| ||| ||| || ||| ||| |||| | ||||| Sbjct 543 CAATCTCCATCGACGTCTCCAT---GGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGT 487 Query 80672 TCACACCGCGCGCC-TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730 | | | || ||| | | | || ||||||| || ||| | || ||| |||| || Sbjct 486 TGAGCTCCCGGGCCTTCTCGCTC-TCGAACGCGTAGTTCATGAGGATAAACGCGTCCGCG 428 Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGG 80789 |||||||| ||||| || | || |||||||| ||| |||| || | || | ||||| Sbjct 427 AGGCCCTGGACGCCAATACCAATGGGGCGGTGACGCATGTTGGACTTGCGC-GCCTCGAT 369 Query 80790 AATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC 80849 | ||||| |||| |||||||| ||||||||| || || || ||| || || Sbjct 368 GACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTACGGGTGACCACCTTGGTCAC 309 Query 80850 ATCATGAAGTTTCTGAAAGTCG--AATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 |||| | ||||| ||| | || | || ||| ||| || || || || Sbjct 308 CTCATACAACTTCTGGTAGTTGAAAACTCCTT--CCTCCACGAACTTAGGCAGCGCCACA 251 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||||| |||||||| |||||||| || | || |||| | || || ||| Sbjct 250 GACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATGACCTCACAGCAT 191 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || || || || || ||||| | |||||| |||||| |||| |||||| Sbjct 190 AAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCC 131 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||||| |||| | || || ||||||| ||| Sbjct 130 TTGTACAACATAAAGGGCACTCCCGTCTCGATCTG 96 >seq76529 Length=2445 Score = 150 bits (166), Expect = 2e-31 Identities = 440/665 (66%), Gaps = 22/665 (3%) Strand=Plus/Plus Query 80412 CTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGA 80471 ||||||||| ||||||||||| ||||| ||||||||||| ||| | |||| ||| || Sbjct 1109 CTCGTTGTTGCCGAGGATCTGGGCCGTTGAAGCCGTCGGCATGGGGGCCACCAGCAGCGA 1168 Query 80472 ATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCC 80528 || ||||| |||||||| | |||| | | | || | || |||| Sbjct 1169 GTTGCGCAGCCCGTGCTTGACCACGTCCT-GTTTGAGGGTAGCCCAGTTCCACAGACCCG 1227 Query 80529 A--ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCG 80584 | ||| ||||| ||||||||||| ||| |||||||||| || || || ||| Sbjct 1228 ACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGCGAGCCCT 1287 Query 80585 CGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTC---ACACGACTCCATAAGGGCCG 80641 |||||||||||||||||| |||||| | ||| ||| |||||| ||| | Sbjct 1288 GGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTCCATCGACGTCTCCAT---GGCAG 1344 Query 80642 CGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC-TGTGGGTCGTCGAAC 80700 | || ||| |||||||| | |||||| | | || ||| | | | || |||||| Sbjct 1345 CAAAGTAGATGGTCTCAAAGATGTTCTTGTTGAGCTCCCGAGCCTTCTCGCTC-TCGAAC 1403 Query 80701 GACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGG 80760 | || ||| | || ||| |||| || |||||||||||||| || |||| || ||| Sbjct 1404 GCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGAACGCCAATACCGATGGGACGG 1463 Query 80761 TGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCG 80819 || ||| |||| || | || | ||||| | ||||| |||| |||||||| Sbjct 1464 TGACGCATGTTGGACTTGCGC-GCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTT 1522 Query 80820 GTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCG--AATTGG 80877 ||| | |||||| || || ||| || || || | | ||||| ||| | || | Sbjct 1523 GTTTAAGTTGCGGGTGACCACCTTGGTCACTTCGTACAACTTCTGGTAGTTGAAAACTCC 1582 Query 80878 TTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA 80937 || ||| ||| || || || || ||||| | |||||||| |||||||| || Sbjct 1583 TT--CCTCCACGAACTTGGGCAGCGCCACAGACGCTAAGTTGCACACAGCCACCTCGTCC 1640 Query 80938 GCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTT 80997 | || |||| | | || ||| || || || || || || ||||| Sbjct 1641 GGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTC 1700 Query 80998 TTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCG 81057 | |||||| |||||| |||| |||||||||||| |||| | || || |||||| Sbjct 1701 TGCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCG 1760 Query 81058 ACCTG 81062 | ||| Sbjct 1761 ATCTG 1765 >seq88141 Length=1707 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || ||||| || ||| | Sbjct 736 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 795 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || |||||||||||||| || || || |||||| Sbjct 796 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 855 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||| ||||| || ||||| | ||| || || ||| ||||| || Sbjct 856 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGC-GACTACAA 914 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || || || ||||| || |||| ||||| |||||| Sbjct 915 CATTCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGCCTTCGTGGTGGA 963 Score = 93.3 bits (102), Expect = 5e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT- 27572 || || |||||||||||||| || |||||||| ||||| || ||||| | ||| || || Sbjct 616 CCGCCCGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTG 675 Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| || | |||||||| || || || || || || ||||||| |||||||| Sbjct 676 AGC-GACTACAACATTCAAAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 734 >seq96335 Length=3561 Score = 129 bits (142), Expect = 7e-25 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || || || || ||| | Sbjct 868 ATGCAGATCTTCGTGAAGACNNTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 927 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || |||||||||||||| || || || |||||| Sbjct 928 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 987 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| |||||||| | || || || ||| ||||| || Sbjct 988 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGC-GACTACAA 1046 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || || || ||||||| ||||||||| Sbjct 1047 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGA 1095 Score = 109 bits (120), Expect = 6e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || |||||||||||||| || || ||||| ||| Sbjct 724 AAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAG 783 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||| | || || || ||| ||||| || |||| ||||| || || || || Sbjct 784 CAGCTTGAGGACGGGCGCACGCTGAGC-GACTACAACATCCAGAAGGAGTCGACGCTGCA 842 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||||| |||||||| Sbjct 843 CCTGGTGCTGCGTCTGCGCGGTGG 866 >seq102828 Length=2266 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || || || ||| | Sbjct 1394 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCA 1335 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || |||||||||||||| || || || |||||| Sbjct 1334 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1275 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||| ||||| || ||||| | ||| || || ||| ||||| || Sbjct 1274 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGC-GACTACAA 1216 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || ||||||| || ||||| Sbjct 1215 CATTCAGAAGGAGTCGACGCTACACCTGGTGCTGCGTCTGCGTGGTGG 1168 >seq99580 Length=8420 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 |||||||||| || ||| | ||||| ||| ||||||| | || || |||||||||||| Sbjct 7379 TGAAGGTGGCACAACTGGCTGGCTATGTGTCAGAGCACTCCGCATACCACCACGGCGAGC 7320 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 | |||||| || |||||| | |||||| |||||||||| || ||| | Sbjct 7319 AAAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCC 7260 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 || | || |||| || |||||||| || || | || ||||||||||| || | Sbjct 7259 ACCTCCTGTCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCAGCCA 7200 Query 32231 GCTCCCGTTACATCTTCACC 32250 || | ||||| || |||||| Sbjct 7199 GCGCTCGTTATATTTTCACC 7180 >seq107323 Length=4802 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 4520 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCG 4461 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||| || || || ||| Sbjct 4460 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 4401 Query 27523 CAGCAGCG 27530 |||||||| Sbjct 4400 CAGCAGCG 4393 >seq49943 Length=3916 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 3581 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCG 3522 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||| || || || ||| Sbjct 3521 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 3462 Query 27523 CAGCAGCG 27530 |||||||| Sbjct 3461 CAGCAGCG 3454 >seq94487 Length=3660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || || || ||||| || || |||||||| || ||||| ||| Sbjct 687 GTGGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 746 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 || ||||| || ||| || ||||||||||||||| || |||||||| Sbjct 747 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 796 >seq59841 Length=830 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || |||||||||| |||||||| |||||||||||| |||| | |||||| Sbjct 330 GCGTCCGCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 271 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || ||||||| | || |||| | ||| |||||| || |||||| ||| || Sbjct 270 CGACGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCA 211 Query 80154 GATGAAAGCCCCACGATCTGCCGCCA 80179 ||| | || || || || |||| || Sbjct 210 AATGTACGCACCGCGGTCGGCCGACA 185 >seq17899 Length=970 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 || || |||||||| |||||||||||||| ||| | || || ||||| ||| | || Sbjct 293 GAACACACGGCCTACCACCACGGCGAGGCTTCGTTACACTCGACGATTGTGAACATGGCG 234 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 ||| | || || || | || ||||| | || | || || || |||||||| || Sbjct 233 CAGGATTTCGTGGGCTCCAACAACCTTCCGCTGCTGTATCCGTCCGGTCAGTTTGGTACT 174 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 || || || ||||||||||| || ||| | ||||| |||||||| Sbjct 173 CGCCTGCAGGGAGGCAAGGATGCCGCTAGCCCTCGTTATATCTTCAC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569465813070880