Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq76103 206 2e-48 seq86700 176 4e-39 seq72444 168 5e-37 seq57059 149 5e-31 seq16837 105 5e-18 seq96931 96.9 3e-15 seq68828 93.3 3e-14 >seq76103 Length=1730 Score = 206 bits (228), Expect = 2e-48 Identities = 419/615 (68%), Gaps = 18/615 (3%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | ||| || ||||| || || || | |||| Sbjct 1057 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 1116 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT-ACGTGAGGAGAGAGTA 29982 |||||||| || || | ||||| | || || || | || || |||||| | | ||| Sbjct 1117 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTA-CAAGTCGCGTGAGCAACGCGTA 1175 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 |||||| || ||||| || || || || |||||||| |||| | |||||| | ||| || Sbjct 1176 GCTGGCAATATTAAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCA 1235 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||| | ||| |||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 1236 CGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGTGCCAT 1295 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGT 30161 | || || ||||| || ||| | ||| || | ||| || | | || Sbjct 1296 CTTATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGCTCGGATTCGT 1355 Query 30162 TC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30216 | || || | | || ||||| ||||| ||||| ||| || | |||||| Sbjct 1356 GCGCAGCTTGTGAATGACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTC 1409 Query 30217 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30276 || ||||||||||||||| || || ||||| | ||||||||| ||||| |||||||| Sbjct 1410 GGCGTTCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCC 1469 Query 30277 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30336 ||||| || |||||| || | || | |||||| | | |||| ||| || || Sbjct 1470 GAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCTCGGGACCCATT 1529 Query 30337 GGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30396 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 1530 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCACCACTGAT 1589 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 30455 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | || Sbjct 1590 AAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGG 1649 Query 30456 GAA---ACTGTCCCT 30467 ||| | ||||||| Sbjct 1650 GAACACATTGTCCCT 1664 >seq86700 Length=3918 Score = 176 bits (194), Expect = 4e-39 Identities = 413/618 (67%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | || || ||||| || || || | |||| Sbjct 2180 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2121 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 2120 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2061 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 2060 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 2001 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | |||||||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 2000 GACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 1942 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 1941 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 1885 Query 30159 TGTTC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 || | || || | || ||| | ||||| ||||| ||| || | ||| Sbjct 1884 CGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTA 1831 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 ||| || |||||||||||||| || || || || | ||||||||| ||||| ||||| Sbjct 1830 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGG 1771 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 1770 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 1711 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 1710 ATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACT 1651 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 1650 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 1591 Query 30454 GGGAAAC----TGTCCCT 30467 || ||| ||||||| Sbjct 1590 CGGGAACACGTTGTCCCT 1573 >seq72444 Length=2747 Score = 168 bits (186), Expect = 5e-37 Identities = 376/558 (67%), Gaps = 16/558 (3%) Strand=Plus/Plus Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979 |||||||||||| || || | ||||| | || || || | || ||| || | | Sbjct 455 GTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGC 514 Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039 |||||||||||| || || || || || || |||||||| |||| | |||||| | ||| Sbjct 515 GTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAACGCTGGTACATCTG 574 Query 30040 ACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGC 30099 || || | ||| |||||| |||||| ||||| || | ||||||||| || || || Sbjct 575 GCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGC 634 Query 30100 CATGAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCT 30154 ||| | || || || || ||||| || ||| | ||| || | ||| || Sbjct 635 CAT----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCG 690 Query 30155 GGGTTGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 | |||| | | | | ||| | | | ||||| ||||| ||| || | ||| Sbjct 691 GATTTGTGCGCAGCTT--GTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTA 748 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 ||| || |||||||||||||| || || ||||| | ||||||||| ||||| || || Sbjct 749 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACTGG 808 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 809 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCC 868 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||| |||||||||| | | ||||||| ||| | | | ||| || || Sbjct 869 ATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACT 928 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 929 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 988 Query 30454 GGGAAAC----TGTCCCT 30467 || ||| ||||||| Sbjct 989 CGGGAACACGTTGTCCCT 1006 >seq57059 Length=1150 Score = 149 bits (164), Expect = 5e-31 Identities = 298/436 (68%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | || || ||||| || || || | |||| Sbjct 688 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCGCCAATAACGTGG 747 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | ||||| | || || || | || ||| || | | |||| Sbjct 748 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAATGCGTAG 807 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 808 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCAGCCGAGCGCTGGTACATCTGGCAG 867 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | |||||||||| |||||| || ||||| | ||||||||| || || ||||| Sbjct 868 GACAACTCTCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT- 926 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158 | || || || || ||||| || ||| | || || | ||| || | | Sbjct 927 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACAATCCGACGGTCGGTCGGATT 983 Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 ||| | | | | ||| | | | ||||| ||||| ||| || | ||||||| Sbjct 984 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCT 1041 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || ||||| | ||||||||| ||||| |||||||| Sbjct 1042 GCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCA 1101 Query 30278 AGGTCTCCCTCTTCCC 30293 ||||| || |||||| Sbjct 1102 AGGTCGCCAACTTCCC 1117 >seq16837 Length=2220 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 1556 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 1615 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 1616 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 1675 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 1676 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 1735 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 1736 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 1795 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| |||| | || ||| |||| |||||| ||| Sbjct 1796 GACGAGGCCCTTGCCGCCTGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 1855 Query 49334 CGCGGC 49339 |||||| Sbjct 1856 CGCGGC 1861 >seq96931 Length=2169 Score = 96.9 bits (106), Expect = 3e-15 Identities = 205/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 933 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 874 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 873 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 814 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 813 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 754 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 753 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 694 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | |||| |||| | || ||| |||| |||||| ||| Sbjct 693 GACGAGGCCCTTGCCGCCCGCTGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 634 Query 49334 CGCGGC 49339 ||| || Sbjct 633 CGCAGC 628 >seq68828 Length=4007 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 926 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCAATCACGCCGGCGCCCGT 867 Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246 ||| || || || || || || || || || | || ||||| | ||||| ||| Sbjct 866 GTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTC 807 Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGAC 49306 ||| | | | ||||||||||||| || ||| || || || | ||||| |||| | Sbjct 806 GGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGGC 747 Query 49307 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGCTCCAGCG 49346 || ||| |||| |||||| |||||||| |||||| Sbjct 746 GTCGTAAGCAGCCGACAGGTCCAGACCCGCGG--CCAGCG 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405723727651608