Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq88141 104 1e-17 seq102828 95.1 8e-15 seq96335 89.7 3e-13 >seq88141 Length=1707 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| ||||| ||| || || |||||| |||||||| || || Sbjct 962 CCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 903 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || ||||| || | |||||| ||||| ||||| Sbjct 902 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGG 843 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||||| || ||| | || | ||| |||||| Sbjct 842 ATGCCCTCCTTGTCCTGGATCTTTTG-CTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 784 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | ||| ||||| || ||||||||| Sbjct 783 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 735 >seq102828 Length=2266 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || |||||| |||||||| || || || || || Sbjct 1177 AGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGA 1236 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | ||||| ||||| ||||| | |||||| Sbjct 1237 CCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 1296 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||||| || ||| | || | |||| |||||| || | || Sbjct 1297 TTGTCCTGGATCTTTTG-CTTGACGTTGTCGATCGAGTCTGACGGCTCCACGTCGAGCGT 1355 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||| ||||| || |||||||| Sbjct 1356 GATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq96335 Length=3561 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || |||||| || ||||| || || || || ||| Sbjct 1085 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGC 1026 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| ||||| ||||| | |||||| Sbjct 1025 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 966 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||||||| || ||| | || | ||| |||||| || | || Sbjct 965 TTGTCCTGGATCTTTTG-CTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGT 907 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | || ||||| || ||||||||| Sbjct 906 GATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 86.0 bits (94), Expect = 4e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || |||||| || ||||| || || || || ||| Sbjct 857 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGC 798 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | |||||| ||||| ||||| | |||||| Sbjct 797 CCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 738 Query 34609 TTGTCTGTGATCTTTTG 34625 ||||| ||||||||| Sbjct 737 TTGTCCTGGATCTTTTG 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314275161340442