Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq102828 154 1e-32 seq88141 145 7e-30 seq96335 134 1e-26 seq102906 102 7e-17 >seq102828 Length=2266 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 1394 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCA 1335 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 1334 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1275 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| || || | ||| |||||| Sbjct 1274 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 1215 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| |||| |||| ||||| |||| |||||||| Sbjct 1214 ATTCAGAAGGAGTCGACGCTACACCTGGTGCTGCGTCTGCGTGGTGGCAT 1165 >seq88141 Length=1707 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || ||||| ||||| ||||| Sbjct 735 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTC 794 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 795 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 854 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | || ||| || || | ||| ||||| Sbjct 855 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 914 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| | ||| |||| |||| | || ||||| Sbjct 915 CATTCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGCCTTCGTGGTGG 962 >seq96335 Length=3561 Score = 134 bits (148), Expect = 1e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || || ||||| ||||| Sbjct 867 CATGCAGATCTTCGTGAAGACNNTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTC 926 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| || || ||||| || ||||| || || || || Sbjct 927 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 986 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| | || | ||| ||||| Sbjct 987 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGAGCGACTACAA 1046 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 1047 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1094 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| |||||| |||| || || || ||||| ||||| Sbjct 450 ATGCAGATCTTCGTGAAAACTCTGACGGGCAAGACTATCACGCTGGACGTGGAGCCGTCG 509 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| || ||||| || || || || Sbjct 510 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 569 Query 27108 CAGC 27111 |||| Sbjct 570 CAGC 573 >seq102906 Length=6336 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| |||||| | || || ||||| ||||| |||||| Sbjct 124 ATGCAGATTTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTTGACGTGGAGCCGTCC 65 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || || || || Sbjct 64 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 5 Query 27108 CAGC 27111 |||| Sbjct 4 CAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434274318468480