Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq88141 127 2e-24 seq102828 116 3e-21 seq96335 100 2e-16 seq107323 86.0 5e-12 seq49943 86.0 5e-12 >seq88141 Length=1707 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| ||||| ||| || || || || || ||| || || || | Sbjct 951 GCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 892 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| |||||||| ||||| ||||| || |||||||||||||||| || | || ||| || Sbjct 891 GTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 832 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || |||| ||| | | | || || || ||||||||| | ||||| Sbjct 831 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGA 773 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||||||| || || ||||| ||||| Sbjct 772 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq102828 Length=2266 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| |||||||| ||| || || || || || ||| || || || |||| || Sbjct 1185 CACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 1244 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||||| || | || ||| |||||| Sbjct 1245 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 1304 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || |||| ||| | | | || || || ||||||||| | |||||| | | Sbjct 1305 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCTGACGGCTCCACGTCGAGCGTGATCGTCT 1363 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| ||||| Sbjct 1364 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq96335 Length=3561 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 1077 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTC 1018 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| |||||| Sbjct 1017 GAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 958 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || |||| ||| | | | || || || ||||||||| | |||||| | | Sbjct 957 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCT 899 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || || ||||| ||||| Sbjct 898 TGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 >seq107323 Length=4802 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||||| | || | || ||| |||||| ||||||||| |||| | | | || Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 4451 Query 39220 G-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 | | ||| || ||||||||||| |||||| | || |||||||| || || |||||||| Sbjct 4452 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 4511 Query 39279 TTGCAT 39284 ||||| Sbjct 4512 CTGCAT 4517 >seq49943 Length=3916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 ||||||||||| | || | || ||| |||||| ||||||||| |||| | | | || Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTCAAT 3512 Query 39220 G-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 | | ||| || ||||||||||| |||||| | || |||||||| || || |||||||| Sbjct 3513 GCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 3572 Query 39279 TTGCAT 39284 ||||| Sbjct 3573 CTGCAT 3578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428925378302762