Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq102828 158 3e-33 seq96335 158 3e-33 seq88141 149 1e-30 seq102906 95.1 3e-14 seq107323 87.8 4e-12 seq49943 87.8 4e-12 >seq102828 Length=2266 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || || | ||||| ||| || || Sbjct 1173 ACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 1232 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||||||||| || || Sbjct 1233 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCC 1292 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||||||||| || ||||| | |||||| | |||||||| | Sbjct 1293 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACGTCGAG 1352 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 1353 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq96335 Length=3561 Score = 158 bits (174), Expect = 3e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 1088 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 1029 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 1028 CGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 969 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||||||||| || ||||| | ||| || | |||||||| | | Sbjct 968 TCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGC 909 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| || || | ||| | ||||| Sbjct 908 GTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Score = 107 bits (118), Expect = 5e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 860 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 801 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| || || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 800 CGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 741 Query 225613 TCCTTGTCTTGGATCTTTTGCT 225634 |||||||| ||||||||||||| Sbjct 740 TCCTTGTCCTGGATCTTTTGCT 719 Score = 104 bits (114), Expect = 6e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || ||||| ||||| || || |||||||| |||||||||||||| || ||||| | | Sbjct 571 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAG 512 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || || | |||||||| | |||||| ||||||||||||| |||||| | ||| | ||| Sbjct 511 TCCGACGGCTCCACGTCCAGCGTGATAGTCTTGCCCGTCAGAGTTTTCACGAAGATCTGC 452 Query 225712 AT 225713 || Sbjct 451 AT 450 >seq88141 Length=1707 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || || || || || || || || || | ||||| ||| || || Sbjct 957 ACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 898 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || ||||||||||| || || Sbjct 897 GCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 838 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||||||||| || ||||| | ||| || | |||||||| | Sbjct 837 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAG 778 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 777 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq102906 Length=6336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || ||||| ||||| || || |||||||| || ||||| |||||||| ||||| | | Sbjct 3 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAG 62 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || || | |||||||| | |||||| ||||||||||||| ||| || | ||| | ||| Sbjct 63 TCGGACGGCTCCACGTCAAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAAATCTGC 122 Query 225712 AT 225713 || Sbjct 123 AT 124 >seq107323 Length=4802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| || || |||||||| ||||| || ||||| ||| || ||| Sbjct 4393 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 4452 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 |||| || | |||||||| | |||||| ||||||||||||| Sbjct 4453 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCA 4495 >seq49943 Length=3916 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| || || |||||||| ||||| || ||||| ||| || ||| Sbjct 3454 CGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATG 3513 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 |||| || | |||||||| | |||||| ||||||||||||| Sbjct 3514 CTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCA 3556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190720999500956