Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq76103 154 1e-32 seq86700 132 4e-26 seq57059 127 2e-24 seq72444 120 2e-22 seq16837 109 4e-19 seq96931 100 2e-16 seq68828 96.9 3e-15 >seq76103 Length=1730 Score = 154 bits (170), Expect = 1e-32 Identities = 398/606 (66%), Gaps = 24/606 (4%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 1069 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCGCCA 1128 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGT-ACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | ||||| | || || || | || || |||||| | | ||||||||| || || Sbjct 1129 GGCTTCAGCCCACTCACCTGCGCTA-CAAGTCGCGTGAGCAACGCGTAGCTGGCAATATT 1187 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 ||| ||||| || || |||||||| | || | |||||| | ||||||||| | ||| || Sbjct 1188 AAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCGCC 1247 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 |||| |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 1248 GTCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGTGCCATCTTATTGAG 1304 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTG 29938 || || ||||| || ||| | ||| || | ||| || | | || | || Sbjct 1305 ATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGCTCGGATTCGTGCGCAGCTT 1364 Query 29939 ATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNN 29997 || | | || ||||| ||||| ||||| ||| || | |||||| | Sbjct 1365 GTGAATGACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTTCAT 1418 Query 29998 NNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30057 | ||||| | ||||||||| ||||| |||||||| ||||| || Sbjct 1419 GTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 1478 Query 30058 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30117 |||||| || | || | |||||| | | |||| ||| || ||| ||||||| Sbjct 1479 AACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCTCGGGACCCATTGCCGTCCCA 1538 Query 30118 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||| | | |||||| ||| | | | ||| || |||| |||||||| Sbjct 1539 GATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCACCACTGATAAACCACAG 1598 Query 30178 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAA---ACT 30233 |||||||||| | ||| | ||| ||||| | |||||||||||| | ||||| | | Sbjct 1599 CAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACATT 1658 Query 30234 GTCCCT 30239 |||||| Sbjct 1659 GTCCCT 1664 >seq86700 Length=3918 Score = 132 bits (146), Expect = 4e-26 Identities = 390/605 (64%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 2168 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2109 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || | || || || |||| ||| || | | |||||||||||| || Sbjct 2108 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2049 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||||||| Sbjct 2048 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCG 1989 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 1988 TCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATCTCATTGAGA 1932 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGA 29939 || || ||||| || ||| | ||| || | ||| || | | || | || Sbjct 1931 TCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTCGTGCGCAGCTTG 1872 Query 29940 TG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 || | || ||| | ||||| ||||| ||| || | |||||| | Sbjct 1871 TGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTAGTCGGCGTGCATG 1818 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 | || || | ||||||||| ||||| |||||||| ||||| || Sbjct 1817 TCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCA 1758 Query 30059 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30118 |||||| || | || | |||||| | | || | || || ||| |||||||| Sbjct 1757 ACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAG 1698 Query 30119 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 || | | |||||| ||| | | | ||| || |||| |||||||||| Sbjct 1697 ATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGC 1638 Query 30179 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TG 30234 ||||||||| | ||| | ||| ||||| | |||||||||||| | || ||| || Sbjct 1637 AGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTG 1578 Query 30235 TCCCT 30239 ||||| Sbjct 1577 TCCCT 1573 >seq57059 Length=1150 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 700 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCGCCA 759 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | ||||| | || || || | || ||| || | | |||||||||||| || Sbjct 760 GGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAATGCGTAGCTGGCGATATTG 819 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||||||| Sbjct 820 AACGGCACGCCAAGTCCCATGTCAGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCG 879 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||| |||||| || |||| ||||| |||||||| || || ||||| Sbjct 880 TCGGCCACGTAGAATTGACAGAACATG---TGGCACGGCGGGAGCGCCAT 926 >seq72444 Length=2747 Score = 120 bits (132), Expect = 2e-22 Identities = 371/577 (64%), Gaps = 14/577 (2%) Strand=Plus/Plus Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 ||||| ||||| || | |||||||||||| || || | ||||| | || || || Sbjct 435 ACGTGGGCATCGCCAATAACGTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 494 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 | || ||| || | | |||||||||||| || || ||||| || || |||||||| Sbjct 495 ACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCG 554 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC---AC 29848 | || | |||||| | |||||| || | ||| |||||| |||||| ||||| | || Sbjct 555 GCCGAACGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAAC 614 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 ||| |||||||| || || ||||| | | || || ||||| || ||| Sbjct 615 ATG---TGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGC 671 Query 29909 ATGATGCGCCTGTC-TTCTGGGTTGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGAT 29966 | ||| || | ||| || | |||| | | | | ||| | | | ||||| | Sbjct 672 ACGATCCGACGGTCGGTCGGATTTGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGT 729 Query 29967 CCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCC 30026 |||| ||| || | |||||| | | ||||| | || Sbjct 730 CCACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAATGACGCC 789 Query 30027 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30086 ||||||| ||||| || ||||| ||||| || |||||| || | || | ||| Sbjct 790 ACTGGAAGCCGTAGACTGGTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGT 849 Query 30087 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30146 ||| | | || | || || ||| |||||||||| | | ||||||| ||| | Sbjct 850 CCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGT 909 Query 30147 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30206 | | ||| || |||| ||||||||||||||||||| | ||| | ||| |||| Sbjct 910 GCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGA 969 Query 30207 CCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCT 30239 | | |||||||||||| | || ||| ||||||| Sbjct 970 CGCGCTTGGTCGTGAGCAACGGGAACACGTTGTCCCT 1006 >seq16837 Length=2220 Score = 109 bits (120), Expect = 4e-19 Identities = 196/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | || ||| | ||| | Sbjct 1579 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTTGACGGGGAAGTCC 1637 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 1638 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 1697 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 1698 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 1757 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 1758 TAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCG 1817 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| |||| || || ||| |||| |||||| ||| ||||| Sbjct 1818 GGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 1861 >seq96931 Length=2169 Score = 100 bits (110), Expect = 2e-16 Identities = 187/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | || ||| | ||| | Sbjct 910 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCCCCGCGCTTGACGGGGAAGTCC 852 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 851 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 792 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 791 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 732 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||| | | | | ||||||||||| || ||| || ||||| | Sbjct 731 TAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCT 672 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 |||| |||| || || ||| |||| |||||| Sbjct 671 GGGATCACGGCGTCGTAAGCAGCCGACAGGTC 640 >seq68828 Length=4007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 49932 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49991 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 926 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCAATCACGCCGGCGCCCGT 867 Query 49992 GTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 50051 ||| || ||||| || || || || || || | || ||||| | ||||| ||| Sbjct 866 GTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTC 807 Query 50052 GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGAC 50111 ||| | | | | ||||||||||| || ||| || ||||| | ||||| |||| | Sbjct 806 GGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGGC 747 Query 50112 GGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 | || ||| |||| |||||| ||| ||||| Sbjct 746 GTCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405576740193964