Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq76103 192 4e-44 seq86700 163 2e-35 seq72444 150 1e-31 seq57059 134 1e-26 seq16837 111 1e-19 seq96931 102 6e-17 seq68828 96.9 3e-15 >seq76103 Length=1730 Score = 192 bits (212), Expect = 4e-44 Identities = 416/615 (68%), Gaps = 18/615 (3%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | ||| || ||||| || || || | |||| Sbjct 1057 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 1116 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT-ACGTGAGGAGAGAGTA 27248 |||||||| || || | ||||| | || || || | || || |||||| | | ||| Sbjct 1117 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTA-CAAGTCGCGTGAGCAACGCGTA 1175 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 |||||| || ||||| || || || || |||||||| |||| | |||||| | ||| || Sbjct 1176 GCTGGCAATATTAAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCA 1235 Query 27309 CGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||| | ||| || ||| ||||| ||||| || | ||||||||| || || ||||| Sbjct 1236 CGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGTGCCAT 1295 Query 27369 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGT 27427 | || || ||||| || ||| | ||| || | ||| || | | || Sbjct 1296 CTTATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGCTCGGATTCGT 1355 Query 27428 TC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 27482 | || || | | || ||||| ||||| ||||| ||| || | |||||| Sbjct 1356 GCGCAGCTTGTGAATGACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTC 1409 Query 27483 TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCC 27542 | ||||||||||||||| || || ||||| | ||| ||||| ||||| |||||||| Sbjct 1410 GGCGTTCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCC 1469 Query 27543 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 27602 ||||| || |||||| || | || | |||||| | | |||| ||| || || Sbjct 1470 GAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCTCGGGACCCATT 1529 Query 27603 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 27662 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 1530 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCACCACTGAT 1589 Query 27663 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 27721 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | || Sbjct 1590 AAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGG 1649 Query 27722 GAA---ACTGTCCCT 27733 ||| | ||||||| Sbjct 1650 GAACACATTGTCCCT 1664 >seq86700 Length=3918 Score = 163 bits (180), Expect = 2e-35 Identities = 410/618 (66%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | || || ||||| || || || | |||| Sbjct 2180 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2121 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 2120 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2061 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 2060 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 2001 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | |||||| ||| ||||| ||||| || | ||||||||| || || ||||| Sbjct 2000 GACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 1942 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 1941 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 1885 Query 27425 TGTTC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 || | || || | || ||| | ||||| ||||| ||| || | ||| Sbjct 1884 CGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTA 1831 Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 ||| | |||||||||||||| || || || || | ||| ||||| ||||| ||||| Sbjct 1830 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGG 1771 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 1770 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 1711 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 ||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 1710 ATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACT 1651 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 27719 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 1650 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 1591 Query 27720 GGGAAAC----TGTCCCT 27733 || ||| ||||||| Sbjct 1590 CGGGAACACGTTGTCCCT 1573 >seq72444 Length=2747 Score = 150 bits (166), Expect = 1e-31 Identities = 372/558 (67%), Gaps = 16/558 (3%) Strand=Plus/Plus Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 |||||||||||| || || | ||||| | || || || | || ||| || | | Sbjct 455 GTGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGC 514 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||||||||||| || || || || || || |||||||| |||| | |||||| | ||| Sbjct 515 GTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAACGCTGGTACATCTG 574 Query 27306 ACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGC 27365 || || | ||| || ||| ||||| ||||| || | ||||||||| || || || Sbjct 575 GCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGC 634 Query 27366 CATGAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCT 27420 ||| | || || || || ||||| || ||| | ||| || | ||| || Sbjct 635 CAT----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCG 690 Query 27421 GGGTTGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 | |||| | | | | ||| | | | ||||| ||||| ||| || | ||| Sbjct 691 GATTTGTGCGCAGCTT--GTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTA 748 Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 ||| | |||||||||||||| || || ||||| | ||| ||||| ||||| || || Sbjct 749 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACTGG 808 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 809 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCC 868 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 ||| |||||||||| | | ||||||| ||| | | | ||| || || Sbjct 869 ATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACT 928 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 27719 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 929 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 988 Query 27720 GGGAAAC----TGTCCCT 27733 || ||| ||||||| Sbjct 989 CGGGAACACGTTGTCCCT 1006 >seq57059 Length=1150 Score = 134 bits (148), Expect = 1e-26 Identities = 295/436 (68%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | || || ||||| || || || | |||| Sbjct 688 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCGCCAATAACGTGG 747 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | ||||| | || || || | || ||| || | | |||| Sbjct 748 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAATGCGTAG 807 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 808 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCAGCCGAGCGCTGGTACATCTGGCAG 867 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | |||||| ||| ||||| || ||||| | ||||||||| || || ||||| Sbjct 868 GACAACTCTCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT- 926 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 27424 | || || || || ||||| || ||| | || || | ||| || | | Sbjct 927 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACAATCCGACGGTCGGTCGGATT 983 Query 27425 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||| | | | | ||| | | | ||||| ||||| ||| || | ||||||| Sbjct 984 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCT 1041 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| || || ||||| | ||| ||||| ||||| |||||||| Sbjct 1042 GCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCA 1101 Query 27544 AGGTCTCCCTCTTCCC 27559 ||||| || |||||| Sbjct 1102 AGGTCGCCAACTTCCC 1117 >seq16837 Length=2220 Score = 111 bits (122), Expect = 1e-19 Identities = 208/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 1556 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 1615 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 1616 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 1675 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 1676 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 1735 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 1736 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 1795 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 1796 GACGAGGCCCTTGCCGCCTGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 1855 Query 45126 CGCGGC 45131 |||||| Sbjct 1856 CGCGGC 1861 >seq96931 Length=2169 Score = 102 bits (112), Expect = 6e-17 Identities = 206/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 933 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 874 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 873 CCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 814 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 813 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 754 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 753 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 694 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | |||| |||| | || ||| |||| |||||| ||| Sbjct 693 GACGAGGCCCTTGCCGCCCGCTGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 634 Query 45126 CGCGGC 45131 ||| || Sbjct 633 CGCAGC 628 >seq68828 Length=4007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 44919 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 44978 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 926 GTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCAATCACGCCGGCGCCCGT 867 Query 44979 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 45038 ||| || || || || || || || || || | || ||||| | ||||| ||| Sbjct 866 GTCGATGAACTTCTTGAGCGCGAGTCCCGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTC 807 Query 45039 GGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCCTAAGGAGGGGACCACGAC 45098 ||| | | ||||||||||||||| || ||| || |||| | ||||| |||| | Sbjct 806 GGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGGC 747 Query 45099 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGCTCCAGCG 45138 || ||| |||| |||||| |||||||| |||||| Sbjct 746 GTCGTAAGCAGCCGACAGGTCCAGACCCGCGG--CCAGCG 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368973667861094