Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq76103 87.8 1e-12 seq72444 87.8 1e-12 seq86700 86.0 4e-12 >seq76103 Length=1730 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| | |||||||| | | Sbjct 1340 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATAAGATGGCACTCCCGC 1283 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACC 1277 |||||||||| | | |||| | ||||| | ||||||| | | ||| ||| | |||| Sbjct 1282 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTGTCGTGCCAGATGTACC 1223 Query 1278 AGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCG 1337 ||||| || |||||| || || |||||||| ||||| ||| |||||| | ||| Sbjct 1222 AGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTTAATATTGCCAGCTACGCGTTGCTCA 1163 Query 1338 CGC-ACATGTTCGCGCAG 1354 ||| || || | |||||| Sbjct 1162 CGCGACTTG-TAGCGCAG 1146 >seq72444 Length=2747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 682 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 625 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTAC 1276 |||||||||| | | |||| | ||||| | ||||||| | | || |||| || | ||| Sbjct 624 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTGTC-CTGCCAGATGTAC 566 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTC 1336 ||||| || |||||| || || |||||||||||||||||| |||||| | || Sbjct 565 CAGCGTTCGGCCGACATGGGACTTGGCGTGCCGTTCAATATCGCCAGCTACGCGTTGCTT 506 Query 1337 GCGCACATGTTCGCGCAG 1354 ||| || | |||||| Sbjct 505 ACGCGACTGGTAGCGCAG 488 >seq86700 Length=3918 Score = 86.0 bits (94), Expect = 4e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 1897 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 1954 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTAC 1276 |||||||||| | | |||| | ||||| | |||||| | | || ||| ||| | ||| Sbjct 1955 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGAGAGTTGTC-CTGCCAGATGTAC 2013 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCG 1330 |||||| || |||||| || || |||||||||||||||||| |||||| Sbjct 2014 CAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAATATCGCCAGCTACGCG 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295703615605074