Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq96335 109 1e-18 seq102828 107 4e-18 seq88141 107 4e-18 >seq96335 Length=3561 Score = 109 bits (120), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||| | || | ||| || Sbjct 1079 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCC 1020 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| || Sbjct 1019 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 960 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | ||| || ||| || || || || || || Sbjct 959 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 900 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | ||||||||||||| |||||| Sbjct 899 TTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 >seq102828 Length=2266 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || || |||||||| ||| | || | || || Sbjct 1183 AGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 1242 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| || Sbjct 1243 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1302 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | |||||| ||| || || || || || || Sbjct 1303 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACGTCGAGCGTGATCGTC 1362 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 1363 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || || |||||||| ||| | || | || || Sbjct 947 AGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 888 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | || ||| || ||||| || Sbjct 887 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 828 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | ||| || ||| || ||||| || || || Sbjct 827 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTC 768 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 767 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152069359880054