Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq96335 178 3e-39 seq88141 176 9e-39 seq102828 167 5e-36 seq52299 113 9e-20 seq106243 107 4e-18 seq102906 93.3 9e-14 seq9226 91.5 3e-13 seq72085 84.2 5e-11 >seq96335 Length=3561 Score = 178 bits (196), Expect = 3e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 915 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 914 TCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCAT 868 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 866 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 807 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 806 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 747 Query 282993 ATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| ||||||||| Sbjct 746 ATGCCCTCCTTGTCCTGGATCTTT 723 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || |||||| ||| || ||||||||||| ||||||||| || ||| | ||||| | | Sbjct 571 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAG 512 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||||| | || || || || ||||| ||||| ||||||| ||| || ||||| |||||| Sbjct 511 TCCGACGGCTCCACGTCCAGCGTGATAGTCTTGCCCGTCAGAGTTTTCACGAAGATCTGC 452 Query 283098 AT 283099 || Sbjct 451 AT 450 >seq88141 Length=1707 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || |||||||| | ||| || || || ||||||||||| Sbjct 962 CCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 903 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || |||||||||| ||| || ||||| ||| Sbjct 902 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGG 843 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 842 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 783 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 782 TCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 736 >seq102828 Length=2266 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| |||| ||| || || || ||||||||||| Sbjct 1168 CCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1227 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| || || ||||| ||| Sbjct 1228 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1287 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | ||| || | || || Sbjct 1288 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCTGACGGCTCCACG 1347 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 1348 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq52299 Length=3408 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 664 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 605 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 604 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 550 >seq106243 Length=9753 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 9345 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 9404 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 9405 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 9464 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| || || || |||| || || || || Sbjct 9465 TTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 9524 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 9525 TTACCGGCACCGTT 9538 >seq102906 Length=6336 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGT 283036 || |||||| ||| || ||||||||||| || ||||| ||| || ||| | ||||| | Sbjct 3 TGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGA 61 Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 ||| || | || || || || ||||| ||||| ||||||| |||||| ||||| ||||| Sbjct 62 GTCGGACGGCTCCACGTCAAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAAATCTG 121 Query 283097 CAT 283099 ||| Sbjct 122 CAT 124 >seq9226 Length=577 Score = 91.5 bits (100), Expect = 3e-13 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | || || | |||||| | || || Sbjct 3 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATCGAGTCCGACGGCTCCAC 61 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||||||||||| ||||| ||||| ||||||||| Sbjct 62 GTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCATT 110 >seq72085 Length=9321 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 ||||| | |||||||| || | ||| || || |||||||||||||| |||||| Sbjct 1021 CGCAGCCACAGTACCAGGTGCATCGTAAATTGCTTCTGGATGTTGTAGTCGATCAGCGTG 1080 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || | ||||| || | || || || ||||||| | | || ||| || |||||| ||| Sbjct 1081 TGGACGTCCTCCAGCAGCTTGCCAGCGAAGATCAGATGCTGGTGGCCAGGCGGAATGCCC 1140 Query 282999 TCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || ||| || ||| || ||| | ||||| | ||| | ||||||| Sbjct 1141 TCCTTGAATTCGATTTTCTGC-TTCACGTTGTCGATCGAGTC--GATCTTCGAC 1191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045150304193996