Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq96335 174 1e-38 seq102828 172 5e-38 seq88141 167 2e-36 seq52299 131 2e-25 seq96931 89.7 5e-13 seq16837 89.7 5e-13 >seq96335 Length=3561 Score = 174 bits (192), Expect = 1e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 1094 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1035 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| |||||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 1034 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 975 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| |||||||| ||| | | | | ||| || |||||| Sbjct 974 ATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 916 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 915 GTCGAGCGTGATCGTCTTGCCCGTCANNGTCTTCACGAAGATCTGCATG 867 Score = 134 bits (148), Expect = 1e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 867 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 808 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 807 CAGCGTGCGCCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 748 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCT 41783 | || |||||||||| ||| ||||||| Sbjct 747 GATGCCCTCCTTGTCCTGGATCTTTTGCT 719 >seq102828 Length=2266 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || ||||| ||||||||||||||| |||||| Sbjct 1167 GCCACCACGCAGACGCAGCACCAGGTGTAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1226 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 1227 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1286 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| |||||||| ||| | | | | ||| || ||||| Sbjct 1287 GATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCTGACGGCTCCA 1345 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 1346 CGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1394 >seq88141 Length=1707 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||||||||| ||||||||||||||| |||||| Sbjct 962 CCACCACGAAGGCGCAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 903 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 902 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGGG 843 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| |||||||| ||| | | | | ||| || |||||| Sbjct 842 ATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 784 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| ||||| || |||||||||||||| ||||| ||||||||| Sbjct 783 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 735 Score = 104 bits (114), Expect = 2e-17 Identities = 97/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| |||||| |||||||| |||||| Sbjct 735 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTTTGAATGTTGTAGTCGCT 676 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| |||| || ||||||||||| || || ||||| ||||| ||||| |||| Sbjct 675 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGCGG 616 Query 41754 GA 41755 || Sbjct 615 GA 614 >seq52299 Length=3408 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 666 CCACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 607 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 606 GAAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 547 Query 41753 GG 41754 || Sbjct 546 GG 545 >seq96931 Length=2169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 724 GGCTGCTACGCGCGCGTGGCGCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACG 783 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 784 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 843 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | ||| || ||| ||||| ||| ||||| || || Sbjct 844 GCGGCCGAGGACTTCCCCGTCAAGCGCGGGGACCGCGTGGCGCAGCTCATCCTCGAGAAG 903 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 904 ATCGAGTACCCGGAGATCCAGGAGGTG 930 >seq16837 Length=2220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 1765 GGCTGCTACGCGCGCGTGGCGCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACG 1706 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 1705 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 1646 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | ||| || ||| ||||| ||| ||||| || || Sbjct 1645 GCGGCCGAGGACTTCCCCGTCAAGCGCGGGGACCGCGTGGCGCAGCTCATCCTCGAGAAG 1586 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 1585 ATCGAGTACCCGGAGATCCAGGAGGTG 1559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461619362448800