Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-43 >seq1 Length=1523961 Score = 190 bits (210), Expect = 2e-43 Identities = 413/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||||||| || || || || ||||| | || || || | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 465240 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCG 24302 |||||||| ||||| || || |||||||| || | || | ||| |||| | | ||| Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 24303 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 | ||| | | |||||| |||||| ||||||||| | || || || || || Sbjct 465179 CGCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTT 465123 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || |||||| | | | || || || | ||||| | ||||| ||||||||| Sbjct 465122 TCGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 465063 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 || |||| ||| || ||||||||||||||||| || || |||||||| || || | Sbjct 465062 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGC 465003 Query 24480 GCCTCGGTAATCTGTACTTCTATAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCC 24538 ||||| | | || ||||| ||| |||| || || | ||||| ||||| || || Sbjct 465002 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 464944 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 24598 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 || ||| || || | || | | ||||| |||||| | |||||||| || Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || ||||| || ||||| ||| | || | | ||| ||||| || | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 24719 ATTTGGATT 24727 |||||| || Sbjct 464763 ATTTGGGTT 464755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719299328800