Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq31 96.9 3e-15 >seq31 Length=344941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | ||||||| ||||| || || ||||||||||| || || || Sbjct 305036 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 305095 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || || | |||| |||||||| || |||||| |||| || | || || || Sbjct 305096 ACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGG 305155 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| |||||| || ||||| | | | | || || || || Sbjct 305156 AGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTC 305215 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| || ||||||||||| || ||||| || || || || ||||| Sbjct 305216 CACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | ||||||| ||||| || || ||||||||||| || || || Sbjct 324291 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 324232 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || || | |||| |||||||| || |||||| |||| || | || || || Sbjct 324231 ACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGG 324172 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| |||||| || ||||| | | | | || || || || Sbjct 324171 AGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTC 324112 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| || ||||||||||| || ||||| || || || || ||||| Sbjct 324111 CACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| ||||| || || ||||| ||||| |||||||| | Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | |||| |||||||| || || ||| |||| | | ||| || || || Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| || ||||| | | ||| | || || || Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||||||||| | || || || || || |||||| Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 305951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| ||||| || || ||||| ||||| |||||||| | Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | |||| |||||||| || || ||| |||| | | ||| || || || Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| || ||||| | | ||| | || || || Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||||||||| | || || || || || |||||| Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 323376 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || ||||||||||| ||||||||||| | Sbjct 305268 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 305327 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||| ||| || || || |||| | | ||| || || || Sbjct 305328 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 305387 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| ||||| ||||| | | | | || || ||||||| Sbjct 305388 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 305447 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 305448 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 305494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || ||||||||||| ||||||||||| | Sbjct 324059 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 324000 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||| ||| || || || |||| | | ||| || || || Sbjct 323999 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 323940 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| ||||| ||||| | | | | || || ||||||| Sbjct 323939 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 323880 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| || || || || ||||| || ||||| || ||||| Sbjct 323879 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 323833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257604651960