Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 217 2e-51 seq67 113 5e-20 seq31 109 6e-19 >seq1 Length=1523961 Score = 217 bits (240), Expect = 2e-51 Identities = 415/609 (68%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 116590 CGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTA 116649 ||||||||| || || ||| | ||||| || ||| | ||||| ||||| |||||| Sbjct 464751 CGAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGCCGGAAGTGTGGGCCATGTA 464810 Query 116650 CAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAG 116709 ||| |||||||| ||| || ||||||| || || |||| || | ||| || Sbjct 464811 CAAGAAGGCCGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTGAA 464870 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| ||| ||||||||| ||| |||||||||||||| |||| || || Sbjct 464871 GGACTGGGTCAAGATGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCGTTCTT 464930 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTTTCGCTCAGGAGGTGC 116828 || |||||||| || || || ||||| || || | ||| | |||| | || |||| Sbjct 464931 TGCTGCCAGCGATGGGATTGTGAACGAAAACCTTG-CGATGAATTTCAGTAGTGAAGTGC 464989 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 | ||| | |||||||| ||||| ||||| || ||||| ||||| || ||| | ||||| | Sbjct 464990 AAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCATTGAAAACATTCACTCCG 465049 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 || |||| ||| | || ||||| ||| | || |||||| || ||| Sbjct 465050 AAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCACTTGC 465109 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || ||||| || || || ||||| | |||||||| ||||| || ||| Sbjct 465110 TACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAGTGGT 465169 Query 117009 TCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 || | | | || |||| | || || | |||| || ||||| |||||||| Sbjct 465170 GCGACTCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGGGAA 465229 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 ||||||||||||| ||| | |||| || ||| | ||||| || || |||||||| | Sbjct 465230 TCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTG 465289 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | || | |||| || || |||||| | || || || |||| || |||||||| | Sbjct 465290 GTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGCGT 465349 Query 117189 GTTTGCTGT 117197 | ||| ||| Sbjct 465350 GCTTGATGT 465358 >seq67 Length=206978 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || |||||||| |||||||| | ||||| ||| | Sbjct 178172 AAGATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCT 178113 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | |||| ||||| |||| || | ||||| || || || || | || Sbjct 178112 TCGGACAGCATTGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGA 178054 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| || |||| || ||||| || |||| || | ||||| || ||||| Sbjct 178053 TCAGCAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTA 177994 Query 40866 CAACATCCAGAAGG 40879 ||||||||| |||| Sbjct 177993 CAACATCCAAAAGG 177980 >seq31 Length=344941 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || ||||| | ||||||||| | || Sbjct 305722 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 305663 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| |||| |||| ||||| || |||||||| | || ||| Sbjct 305662 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 305603 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || ||||| || || | ||||| | | |||||||||| Sbjct 305602 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 305543 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | || |||| | || ||||| || | || ||| Sbjct 305542 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 305495 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || ||||| | ||||||||| | || Sbjct 323605 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACTATCACATTGGACGTCGAACCGTCC 323664 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| |||| |||| ||||| || |||||||| | || ||| Sbjct 323665 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 323724 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || ||||| || || | ||||| | | |||||||||| Sbjct 323725 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 323784 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| | || |||| | || ||||| || | || ||| Sbjct 323785 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 323832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217203525600