Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq31 150 2e-31 >seq31 Length=344941 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||| ||||| || ||||||||||| ||||||| ||||| ||| Sbjct 305510 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATC 305569 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| |||||||| |||||||||| |||||||| ||||| ||||| |||||||| Sbjct 305570 CTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTC 305629 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| |||||||| || | |||| | ||| | ||||| || | || | || Sbjct 305630 TTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGT 305689 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || ||||| |||||||| Sbjct 305690 CTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||| ||||| || ||||||||||| ||||||| ||||| ||| Sbjct 323817 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATC 323758 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| |||||||| |||||||||| |||||||| ||||| ||||| |||||||| Sbjct 323757 CTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTC 323698 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| |||||||| || | |||| | ||| | ||||| || | || | || Sbjct 323697 TTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGT 323638 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || ||||| |||||||| Sbjct 323637 CTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| ||||| ||||| || ||||||| ||||| ||| || Sbjct 305285 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 305344 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||||||| | || | |||||| ||||| ||||| || || ||||| ||| Sbjct 305345 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 305404 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||||| || || | || | | ||||| | ||| || || | || | |||||| Sbjct 305405 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 305464 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || ||||| ||||||||| Sbjct 305465 CCCCGTCAACGTCTTCACAAAGATCTGCATG 305495 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| ||||| ||||| || ||||||| ||||| ||| || Sbjct 324042 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 323983 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||||||| | || | |||||| ||||| ||||| || || ||||| ||| Sbjct 323982 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 323923 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||||| || || | || | | ||||| | ||| || || | || | |||||| Sbjct 323922 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 323863 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || ||||| ||||||||| Sbjct 323862 CCCCGTCAACGTCTTCACAAAGATCTGCATG 323832 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| || || || ||||| || || ||||||| ||| || || || Sbjct 305741 CACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTC 305800 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || | |||||| ||||| ||||| || || ||||| || Sbjct 305801 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 305860 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | |||| | ||| | ||||| || | || | || || Sbjct 305861 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTT 305920 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || || ||||||||||| Sbjct 305921 GCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| || || || ||||| || || ||||||| ||| || || || Sbjct 323586 CACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTC 323527 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || | |||||| ||||| ||||| || || ||||| || Sbjct 323526 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 323467 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | |||| | ||| | ||||| || | || | || || Sbjct 323466 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTT 323407 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || || ||||||||||| Sbjct 323406 GCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828760934520