Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq31 123 3e-23 seq16 91.5 2e-13 >seq31 Length=344941 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||||||| ||||||||||||||||||||| || ||| || | Sbjct 305051 ACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACC 305110 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||| || || ||||| || || || || | || | | ||||| Sbjct 305111 GTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTT 305170 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || || | ||| | | | | ||| | ||||||||| | |||| Sbjct 305171 GTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGA 305229 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | |||||| || ||||| ||||| Sbjct 305230 TGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||||||| ||||||||||||||||||||| || ||| || | Sbjct 324276 ACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACC 324217 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||||||||| || || ||||| || || || || | || | | ||||| Sbjct 324216 GTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTT 324157 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || || | ||| | | | | ||| | ||||||||| | |||| Sbjct 324156 GTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGA 324098 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | |||||| || ||||| ||||| Sbjct 324097 TGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 >seq16 Length=548637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 313 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 254 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 253 TACTAACGAGGATTG 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815384206800