Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq69 165 2e-35 seq1 107 4e-18 >seq69 Length=184949 Score = 165 bits (182), Expect = 2e-35 Identities = 683/1068 (64%), Gaps = 72/1068 (7%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | | |||||| |||||||| ||| |||| ||||||||||| | | Sbjct 88031 CCATGTACGTGATCAAGCGTGACGGGCGTCGGGAAGACGTCAAATTCGACAAAATTACAG 88090 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 |||| |||| || ||||| ||||| || | | | | ||| ||| ||| ||| Sbjct 88091 CGCGTATCACCAAACTCTGCTATGGACTCAATGACGAATACGTGGATGCTGTCAAGATCT 88150 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | || || || | | || || ||| |||| || || ||| | ||| ||||| || | Sbjct 88151 CGCAAAAGGTCGTCGCTGGAGTATACCCCGGTGTGACGACGTCGGAATTGGACGAATTGG 88210 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 ||||||| || || ||||| |||| ||||| || | ||| |||| | | Sbjct 88211 CTGCGGAAACAGCCGCGTATTGTGCGACACAGCACCCAGATTTCTCAAAATTGGCTGCGC 88270 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAA---------------------GAGT 248695 |||| || ||||| | | ||||| | ||||| |||| Sbjct 88271 GGATTGCTGTCTCGAATTTGCACAAGAATACGAACAAGGTTTTCAGTGAAAATGTTGAGT 88330 Query 248696 CGTTCGTCGAAACCATGGCTGACCTACATGCCTATGG------GATGGTCGCCGATGACG 248749 |||| | ||| || | || | | | | | | | || | |||||||| | Sbjct 88331 TGTTCCACAAAAACAAGCACGAAGTGAACGGCCAAGCAGCTCCGTTGATTGCCGATGATG 88390 Query 248750 TCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 || || | | |||| || |||| | || | ||| || || || | ||| | Sbjct 88391 TCTACGAGATCATCATGAAGCACAAGG---ACGTACTGAACTCGGCCATCATCCACGACC 88447 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||||| ||||| ||||| ||||| ||| ||||||| | || Sbjct 88448 GTGACTTTGAATACGATTACTTTGGCTTCAAGACGCTTGAGCGATCGTATTTATTCCGTG 88507 Query 248867 TTGATGGCAAGATCGTG-GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 | | ||| || | ||| |||||| ||||| ||| | ||||| || ||||| || || Sbjct 88508 TGGGTGGGAAAGT-GTGCGAACGACCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATC 88566 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACG-----CT 248980 || || || || || || ||||| |||||||| ||||| | | || Sbjct 88567 CATAAAGAAGATATCAAGCTGGTGCTTGAGACGTA--------TGAGTACATGTCGCTCT 88618 Query 248981 GGATG---ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAG 249033 | | || || |||||||| || || || ||||| ||||| || | |||| Sbjct 88619 CGTTCTTCACGCACGCCACACCAACACTGTTTAACGCAGGTACACCACGGCCACAA---- 88674 Query 249034 CTGAGCTCGTGCTTTCTTCTTG-CCATGCAAGACGACTCTGTCGACGGCATTTATGACAC 249092 ||| ||||| |||||| ||| ||||||||||||| ||| | || |||||||| ||||| Sbjct 88675 CTGTCTTCGTG-TTTCTTATTGGCCATGCAAGACGATTCTATTGAGGGCATTTACGACAC 88733 Query 249093 GCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 || || || || || || || | || || || ||||| || | | ||| Sbjct 88734 TCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGGGGTATCGGCATCAGCATGCACAA 88793 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTA 249210 ||| || |||| | | |||||| ||||||||||| ||| | ||||| || Sbjct 88794 CATTCGCGCGACGAATAGCTACATCCGCGGTACAAATGGCACGTCCA--ACGGTATTGTG 88851 Query 249211 CCCCTCCTTCGATGCTTTGAGTC-CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CG 249266 || | | || || || | | ||| || | | | | | || | || || || Sbjct 88852 CCTATGTTGCG-TGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGTGGTGGCAAGCG 88910 Query 249267 AAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGA 249326 || |||||||| || || |||||||| |||||| ||||| |||| ||||||||||| Sbjct 88911 CAAAGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCCTGGA 88970 Query 249327 CTTGAAAAAGAACAACGGCAACGAGC-TCATGAGAGCGCGTGACCTCTTCTACGGCCTGT 249385 |||| ||||| |||| || || | |||| | || ||||| || || |||| | ||| Sbjct 88971 TTTGAGGAAGAATCACGGTAATGAACTTCAT-CGTGCACGTGATCTGTTTTACGCCATGT 89029 Query 249386 GGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 || || | || ||||||||| || || | ||| ||||||| |||| Sbjct 89030 GGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACGGCGAGTGGA 89077 >seq1 Length=1523961 Score = 107 bits (118), Expect = 4e-18 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 || || |||||| || | | || ||||||||||| ||||||| | ||| |||||||| Sbjct 624743 CCACCATTCAAGATCATCGTACTTGACGAGGCGGATTCCATGACAGGCGATGCGCAGTCG 624684 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 || | ||||||| |||||| | | ||| || || || |||||| || | |||||| Sbjct 624683 GCGTTGCGCCGAATGATGGAAAACTATTCCAAGGTTACCCGGTTTTGCTTGATTTGCAAC 624624 Query 254325 TACGTG--TCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||| ||||| |||| | || |||| ||||||||||| ||||| || || Sbjct 624623 TACGTGAGTCGAA--TCATTGAACCAGTGGCGTCTCGGTGCGCAAAGTTCCGGTT 624571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762135134080