Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq69 147 3e-30 >seq1 Length=1523961 Score = 205 bits (226), Expect = 1e-47 Identities = 414/608 (68%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||| || || || || ||||||| || || || | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || | Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 465239 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33750 ||||||||||||| || || || ||||| || | || | || |||| | | |||| Sbjct 465238 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 465179 Query 33751 ---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 ||| | | |||||| |||||| ||||||||| | || || || || |||| Sbjct 465178 GCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 465122 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | || ||| | | | || || || | ||||| | || || || ||||||| Sbjct 465121 CGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 465062 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | |||| ||| || ||||||||||||||||| ||||| |||||||| || || | | Sbjct 465061 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCG 465002 Query 33928 CCTCGGTAATCTGCACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 |||| | | |||||||| ||| |||| || || | ||||| ||||| || ||| Sbjct 465001 CCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCA 464943 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 34046 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 464942 TCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATC 464883 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 || ||| || || | || | | ||||| |||||| | |||||||| || Sbjct 464882 TTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCT 464823 Query 34107 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || ||||| || ||||| ||| | || | | |||||||||||| | ||||||| | Sbjct 464822 TCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGA 464763 Query 34167 TTTGGATT 34174 ||||| || Sbjct 464762 TTTGGGTT 464755 >seq69 Length=184949 Score = 147 bits (162), Expect = 3e-30 Identities = 712/1120 (64%), Gaps = 28/1120 (3%) Strand=Plus/Minus Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 |||||||| || | ||| || | ||| | |||| | || || || || | | | Sbjct 89630 GTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATG 89571 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 ||||||||||| || || || ||||| ||||||||||| | ||| | ||||| |||| Sbjct 89570 AGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATTA 89511 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 || | |||||||| || ||||| || || ||||| || | || || ||||||||| Sbjct 89510 GATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTG 89451 Query 62874 ---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62930 ||||| ||| | | || | || || |||| | ||| |||| ||| Sbjct 89450 GTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGACA 89394 Query 62931 AACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCAT 62988 || || || ||||| || |||| || ||||| || || || | | | || | | Sbjct 89393 AATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTGT 89336 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 | | | | |||| ||| | ||||| | ||||| || || ||||| ||||| Sbjct 89335 ACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCG 89276 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 ||| || || |||||||| || || ||| | || || || ||||| ||||||| | Sbjct 89275 ACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGT 89216 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT-- 63166 | | ||| || ||| | | | ||||| || | | | || | || Sbjct 89215 CCAAAATGGCGAACCACAATTGTTGCGCCTTGAT----GGTCTTGCGGGCCAAGCCCTGG 89160 Query 63167 --TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 |||||| || ||||| ||||| || || ||||| | | || | || Sbjct 89159 GCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGTC 89100 Query 63225 CATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 ||||| || || | || || |||||| |||| | | ||| || ||||| || | Sbjct 89099 GCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACA 89042 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 ||| || ||||| | || ||| ||||| | || | ||| || || || || Sbjct 89041 AATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTGAT 88982 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 |||| | | ||| |||||| | | | || | ||||||||| ||||| || || || | Sbjct 88981 TCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCAA 88922 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 || || ||| || || ||||| | ||| | ||| |||| ||| | || | Sbjct 88921 ACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACAC 88862 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 |||||| || | ||||||||| || | ||||| |||||| ||| |||| | | Sbjct 88861 GCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGATGTAGCTATTCGTCG 88802 Query 63523 CACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 | ||||| || || |||| || || ||||||||| || ||||| ||||||| Sbjct 88801 CGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGCGCA 88744 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 | | || | ||||| || ||||| || || ||| || |||| | || ||||| Sbjct 88743 TTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAACA 88684 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 ||||| ||| | || | || || || ||||| | || || | |||||||| || Sbjct 88683 CGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAA 88624 Query 63701 CCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | || | ||| | |||||||||| | | ||||| || ||| | Sbjct 88623 GAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTATGGA 88565 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 | ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 88564 TGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815159456800