Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq69 125 9e-24 >seq1 Length=1523961 Score = 185 bits (204), Expect = 1e-41 Identities = 406/601 (68%), Gaps = 7/601 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||||||| || || || || ||||| | || || || | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 465240 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 |||||||| ||||| || || |||||||| || | || | || |||| | ||| | Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 36329 T-CATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || | ||||| |||||| ||||||||| | || || || || || || Sbjct 465179 CGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 465120 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 |||||| | | | || || || | ||||| | ||||| ||||||||||| Sbjct 465119 ATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGC 465060 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||| ||| || ||||||||||||||||| || || |||||||| || || | ||| Sbjct 465059 GAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGCC 465000 Query 36506 TCGGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | | || ||||| ||| |||| || || | ||||| ||||| || || || Sbjct 464999 TCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCATC 464941 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||||| ||||| |||||||| || || || || || | |||||| || | || Sbjct 464940 GCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTT 464881 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 ||| || || | || | | ||||| |||||| | |||||||| || || Sbjct 464880 GACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTC 464821 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 ||||| || ||||| ||| | || | | ||| ||||| || | ||||||| ||| Sbjct 464820 GGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATT 464761 Query 36745 T 36745 | Sbjct 464760 T 464760 >seq69 Length=184949 Score = 125 bits (138), Expect = 9e-24 Identities = 677/1067 (63%), Gaps = 40/1067 (4%) Strand=Plus/Minus Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 |||||||||||| || || || ||||| ||||||||||| | ||| | ||||| ||| Sbjct 89571 GAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATT 89512 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| | |||||||| || ||||| || || ||||| || | || || |||||||| Sbjct 89511 AGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCT 89452 Query 65666 G---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT-- 65720 | ||||| ||| | | || | || || |||| | ||| | || | ||| Sbjct 89451 GGTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAA---CACA-CCATTGT 89399 Query 65721 --ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATC 65776 ||||| || || ||||| || |||| || || || || || || | | | || Sbjct 89398 CGACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT- 89340 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 | || | | | |||| ||| | ||||| | || || || || ||||| || Sbjct 89339 -GTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTG 89281 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 ||| ||| || || |||||||| || || ||| | || || || ||||| ||||| Sbjct 89280 ATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTG 89221 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG------TATCT 65950 || || | ||| || ||| | | | |||| | || | ||| | | Sbjct 89220 AGCGTCCAAAATGGCGAACCACAATTGTTGCGCCT---TGATGGTCTTGCGGGCCAAGCC 89164 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 || | |||||| || ||||| ||||| || || ||||| | | || Sbjct 89163 CTGGGC---TTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAG 89107 Query 66011 TCCAGGACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTC 66068 |||| ||||| || || | || || |||||| |||| | | ||| || ||| Sbjct 89106 ACCAGTCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTC 89049 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 || || | ||| || ||||| | || ||| | ||| | | | ||| || || Sbjct 89048 ATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTA 88989 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || |||||| | | ||| |||||| | | | || ||||||||| ||||| || Sbjct 88988 CCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAG 88929 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 || || | || || ||| || || ||||| | ||| | ||| |||| ||| Sbjct 88928 ATTGCAAACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTG 88869 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 | || | |||||| || | |||||| ||||| || ||||| || ||| ||| ||||| Sbjct 88868 AACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGATGTAGCTA 88809 Query 66309 CCACTTGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 | || ||||| || || |||| || || ||||||||| || ||||| Sbjct 88808 TTCGTCGCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGC 88751 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 |||||||| | || | || || || |||||||| ||| ||| || |||| | || Sbjct 88750 ATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATA 88691 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||||| ||||| ||| | || || || || ||||| | || || | |||| Sbjct 88690 AGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGT 88631 Query 66487 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 |||| || | || | ||| | |||||||||| | | ||||| | Sbjct 88630 GCGTGAAGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCT 88572 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 | ||| || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 88571 TTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170249580400