Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq31 125 7e-24 seq67 95.1 1e-14 seq69 86.0 6e-12 >seq31 Length=344941 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | || ||||| || |||||||| || ||||| Sbjct 305495 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 305554 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || |||||| |||| |||||||||||||| ||||| Sbjct 305555 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 305614 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| || |||||||| | | || | | ||||| || || || Sbjct 305615 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 305674 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || || || || || || |||||| Sbjct 305675 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 305723 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | || ||||| || |||||||| || ||||| Sbjct 323832 GCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 323773 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || |||||| |||| |||||||||||||| ||||| Sbjct 323772 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 323713 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| || |||||||| | | || | | ||||| || || || Sbjct 323712 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 323653 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || || || || || || |||||| Sbjct 323652 GTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 323604 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||| | || || || || ||||| ||||| |||||| Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || |||||| | |||| ||| || ||||| ||||| Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || || || || || | | || | | ||||| || || || Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || ||||| | || || || || ||||| ||||| |||||| Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || |||||| | |||| ||| || ||||| ||||| Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || || || || || | | || | | ||||| || || || Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 >seq67 Length=206978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | || || |||||| ||||||||||||||||||| ||||| || ||||| ||| Sbjct 178015 TCTTCCAATTGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTG 178074 Query 139670 TCGGTGATTTTTTGTTTTA-GCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||| ||||| || | | ||| || || |||| | || ||||| || | || | Sbjct 178075 TCCTGGATCTTTTGCTTGACGTTGT--CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGA 178132 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTAT 139771 |||||||| || | ||||| ||||| || ||||| ||||| Sbjct 178133 TGGTCTTGCCCGTAAGAGTTTTGACGAAGATCTGCAT--CTTAT 178174 >seq69 Length=184949 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 |||| ||||| || || || |||| ||| || ||| | ||||||||||| |||| Sbjct 90289 CGACCGTAAACTGAATGGCATCGGCCTTCGGTCGCCCACGCATGTAGTACATGCCGGTCT 90230 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGG 152838 | || || || | ||| |||| | ||||| ||| | || ||| || || ||||||| Sbjct 90229 TAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTGCTCACCGTCGGGTCGG 90170 Query 152839 CCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCA 152895 | |||| |||||| | ||| || |||||| || | || || | ||| ||||||| Sbjct 90169 CGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACCACGATCAGCTGCCA 90113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062077752000