Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 199 6e-46 seq69 167 3e-36 >seq1 Length=1523961 Score = 199 bits (220), Expect = 6e-46 Identities = 416/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||||||| || || || || ||||||| || || || | ||| || ||||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 465240 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA----CTG-G 50125 |||||||||||||| || || || ||||| || | || | || |||| | | | Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 50126 CGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 ||| ||| | | |||||| |||||| ||||||||| | || || || || ||| Sbjct 465179 CGCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTT 465123 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || || ||| | | | || || || | ||||| | || || || |||||| Sbjct 465122 TCGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 465063 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || |||| ||| || ||||||||||||||||| ||||| |||||||| || || | Sbjct 465062 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGC 465003 Query 50305 GCCTCGGTAATCTGCACTTCTGTAC-AAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 ||||| | | |||||||| ||| |||| || || | ||||| ||||| || || Sbjct 465002 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 464944 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 || ||||| ||||| |||||||| || || || || || ||||||| || | Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || ||| || || | || | | ||| | |||||| | |||||||| || Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || ||||| || ||||| ||| | || | | |||||||||||| | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 50544 ATTTGGATT 50552 |||||| || Sbjct 464763 ATTTGGGTT 464755 >seq69 Length=184949 Score = 167 bits (184), Expect = 3e-36 Identities = 906/1428 (63%), Gaps = 39/1428 (3%) Strand=Plus/Minus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||| |||| | || | ||| |||| || || || |||| || | ||||| Sbjct 89934 AAATTCACCAGCGAGCACGCGACGATTGTACATGTTGGACGTGAATGGCTCAATGGATTC 89875 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 |||||| ||||| || |||||||| || ||||||||||| || |||| ||| | || Sbjct 89874 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 89815 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG- 79243 | | ||| | | || || | |||| | | |||||||||| ||| |||| | Sbjct 89814 GCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAGATGT 89755 Query 79244 -GGACA-ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTA 79301 ||| ||| ||| | |||| | || | || || || || | || || ||| Sbjct 89754 TGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTCGTA 89695 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 |||||||| || || | || | || | ||| | || || | ||||| || || Sbjct 89694 AGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATAGTA 89635 Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATT 79421 | ||||| ||||| | ||| || | ||| | |||| || || || || | Sbjct 89634 CAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCC 89575 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | |||||||||||| || || || ||||| ||||||||||| | ||| | ||||| Sbjct 89574 CATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAG 89515 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 |||||| | |||||||| || ||||| || || ||||| || | || || ||||| Sbjct 89514 ATTAGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATT 89455 Query 79542 CCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 79598 ||| || || ||| | | || | || || |||| | ||| |||| Sbjct 89454 TCTGGTCACAAT--CTTCGTG-ATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTC 89398 Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCC 79656 ||||| || || || | || |||| || || || || || || | | | || Sbjct 89397 GACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGT 89338 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | || | | | ||| ||| | |||||| | ||| || || || ||||| ||| Sbjct 89337 G--TACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGA 89280 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || ||| || || |||||||| || || ||| | || || || ||||| |||||| Sbjct 89279 TTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGA 89220 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT------ATCTC 79830 | || | ||| || ||| | | | ||||| || | |||| | | | Sbjct 89219 GCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGATGGT---CTTGCGGGCCAAGCCC 89163 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 | || ||||| | || || || ||||| || || ||||| ||| | Sbjct 89162 TGGGCT---TCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGA 89106 Query 79891 CCAGGACATTCGTCAGGACACATCAACGAC--CACTCTCCATCATCCTTTACTCGTTTCA 79948 |||| ||| | ||| || | || ||| ||||| || | | | || || |||| Sbjct 89105 CCAGTCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCA 89048 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 | || | ||| || ||||| | || ||| ||||| | | | ||| || || | Sbjct 89047 TGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTAC 88988 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | |||||| | | ||| |||||| | | | || | ||||||||| ||||| || | Sbjct 88987 CGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGA 88928 Query 80069 TGGCCATAACTCCCGGT-CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 | || | | ||| | || ||| || || ||||| | ||| | ||| |||| ||| Sbjct 88927 TTGCAA-ACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTG 88869 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 | || | |||||| || | |||||| ||||| || ||||| || ||| ||| ||||| Sbjct 88868 AACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGATGTAGCTA 88809 Query 80188 CCACTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 | || ||||| || || |||| || || ||||||||| || ||||| Sbjct 88808 TTCGTCGCGCGAATGTTGTGCATGCTGATG--CCGATACCCCCTGCCCACTTGGAGATGC 88751 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 |||||||| | || | || || || |||||||| || ||| || |||| | || Sbjct 88750 ATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATA 88691 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 ||||| ||||| ||| | || || || || ||||| | || || | |||| Sbjct 88690 AGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGT 88631 Query 80366 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAAT-AGCTGATTCTATATCCCA 80423 |||| || | |||| ||| | |||||||||| | | | || ||||| Sbjct 88630 GCGTGAAGAACGAGAGCGACATGTAC-TCATACGTCTCAAGCACCAGCTTG-ATATCTTC 88573 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || ||| || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 88572 TTTATGGATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266016708400