Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq69 95.1 2e-14 >seq1 Length=1523961 Score = 104 bits (114), Expect = 3e-17 Identities = 553/860 (64%), Gaps = 64/860 (7%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||| |||||||| ||||| | || |||||||| | ||||| | ||| || Sbjct 464800 TGGGCCATGTACAAGAAGGCCGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTG 464859 Query 125082 AAGGACCTGTACGATTGGG---AGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | |||||| | || |||| ||| |||| || | || || || || | Sbjct 464860 CATGACCTGAAGGACTGGGTCAAGA------TGACCGACAACGAACGCTTCTTCATCAAG 464913 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | ||||| |||||||| | | |||||| || || ||||| || || || | || Sbjct 464914 CACGTCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCT--TGCGATGA 464971 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 | || || | | || | || |||| | ||||||||||||||||| || | Sbjct 464972 ATTTCAGTAGTGAAGTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCA 465031 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 |||| ||| | ||||| ||| ||||||| ||||||||| ||||| || ||| Sbjct 465032 TTGAAAACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCG- 465090 Query 125317 AACGTAAA----CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGT----AA 125368 | || || ||| |||| | || ||||| || | || || ||| || Sbjct 465091 ACCGAGAAGGACCACTTGCTACGT---GCTATCGAAACCATCCC----ATGCGTGACCAA 465143 Query 125369 AAAGGCTCAATGGGTGATTCG-GTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGA 125426 ||||| || | || ||| |||| ||| | || | || | || || || | Sbjct 465144 GAAGGC-CAGTTGGGCATTGAAGTGGTGCGACTCGCGCGCTG-CTGCCTATGCTGAACGG 465201 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 | ||||||| || || || ||||| ||||||||||||||| || ||| ||||||| Sbjct 465202 ATTTTGGCATTTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCT-CCATCTT 465260 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | |||||||| || |||||||| || || | | || || | || ||| Sbjct 465261 CTGGTTGAAGAAGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCG 465320 Query 125546 AGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACTGTT---TCG-CAACTATCT 125596 || || || | |||||||||||||| | | | |||| ||| |||| | || Sbjct 465321 TGATGAAGGGTTGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCAACAAGCT 465380 Query 125597 GCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAG 125656 ||| |||| | | || | |||| |||| | || || ||||| | Sbjct 465381 ---TCCGGAGTCACG--CGTGC-ACGAAA---TCAT-----TGGTGAC----GCCGTCAC 465422 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 ||| || | || || | | || || || || || ||||||||||||||| | Sbjct 465423 GATTGAGAAGGAATTCGTCAAGGATTCGCTCCCTGTGGAATTGATTGGCATGAACTCGAC 465482 Query 125717 GCTAATGTGCGAGTACATAGAGTT-TGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC 125775 ||| ||||| ||||||| || || |||| | |||||| | || | | | | || Sbjct 465483 GCTGATGTGTCAGTACATTGAATTCTGTG-CTGATCGTTTGCTACATGCGCTTGGTGTAT 465541 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 |||||| |||||||||||||| || ||||| | ||| || || ||||| |||| | Sbjct 465542 CCAAGATCTACAACGCCAAGAACCCTTTTGACTGGATGGACATGATCTCACTGCAGGGCA 465601 Query 125836 AGACCAACTTTTTCGAGAAG 125855 ||||||| || || |||||| Sbjct 465602 AGACCAATTTCTTTGAGAAG 465621 >seq69 Length=184949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 247/374 (66%), Gaps = 2/374 (1%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||| ||||| || ||||| || ||||| ||||| || | || || | || || | Sbjct 88928 TCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACG 88987 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 | |||| || || | || ||||||| || | ||| | ||||||||||||| Sbjct 88988 GTAATGAACTTCATCGTGCACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCA 89047 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 ||||||| || | | | ||| | ||||| || | ||||| | | | |||| Sbjct 89048 TGAAGCGTGTGGAAGCCAACGGCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTC 89107 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC- 97148 ||| ||| |||||||| || || || |||||| |||||| ||||| ||||| Sbjct 89108 TGTTCGACTGCTGGGGTGATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCT 89167 Query 97149 CGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTA 97208 | || |||| | || | || | | || ||||| ||||| || |||||| | Sbjct 89168 TGGCCCGCAAGACCA-TCAAGGCGCAACAATTGTGGTTCGCCATTTTGGACGCTCAGATC 89226 Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 || || || || || ||||| |||||||||||| | |||||||| || || | Sbjct 89227 GAAACCGGCACACCTTACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAA 89286 Query 97269 CACTTGGGCACCAT 97282 |||||||||| || Sbjct 89287 AACTTGGGCACTAT 89300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056328395600