Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq31 96.9 2e-15 seq67 84.2 1e-11 >seq31 Length=344941 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| ||||||||||| || || || ||||| || || Sbjct 305723 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 305782 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| |||| ||||||||| ||| || ||||| || || || | || Sbjct 305783 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 305842 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || || | | |||| |||| |||| || Sbjct 305843 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 305902 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || || || || || || |||||||| ||||| Sbjct 305903 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| ||||||||||| || || || ||||| || || Sbjct 323604 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 323545 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| |||| ||||||||| ||| || ||||| || || || | || Sbjct 323544 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 323485 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| ||| || || | | |||| |||| |||| || Sbjct 323484 AATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGAC 323425 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || || || || || || || |||||||| ||||| Sbjct 323424 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| |||||||||||||| || || || ||||| || ||| || | Sbjct 305508 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 305567 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| ||| || | ||||||||| || | || |||||||| || Sbjct 305568 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 305627 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||||| || | | |||| |||| |||| ||||||| || || Sbjct 305628 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATA 305687 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| | || || || || || ||||| Sbjct 305688 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| |||||||||||||| || || || ||||| || ||| || | Sbjct 323819 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 323760 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||||||| ||| || | ||||||||| || | || |||||||| || Sbjct 323759 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 323700 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||||| || | | |||| |||| |||| ||||||| || || Sbjct 323699 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATA 323640 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| | || || || || || ||||| Sbjct 323639 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||||||||| || ||||| |||||||||||| |||| | | ||| || Sbjct 305057 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 305116 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| || ||| || | |||||| || || | || || ||||| || || Sbjct 305117 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 305176 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | | ||| | ||| |||| || |||| ||| || || || Sbjct 305177 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 305236 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || ||||| || ||||| Sbjct 305237 GCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||||||||| || ||||| |||||||||||| |||| | | ||| || Sbjct 324270 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 324211 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| || ||| || | |||||| || || | || || ||||| || || Sbjct 324210 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 324151 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | | ||| | ||| |||| || |||| ||| || || || Sbjct 324150 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 324091 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || ||||| || ||||| Sbjct 324090 GCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 >seq67 Length=206978 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33182 TTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATT 33241 ||||| || ||||| || || | || | || ||||||||||| ||| ||| || Sbjct 177982 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 178041 Query 33242 AAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGA 33301 | ||||||||| || | || || ||||| || || ||| || || || | | | Sbjct 178042 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 178101 Query 33302 ATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 || |||| |||| |||||||| || || || || |||||||||||||| ||||| Sbjct 178102 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 178161 Query 33362 ATTTGCATGTT 33372 || ||||| || Sbjct 178162 ATCTGCATCTT 178172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776395618380