Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq31 123 2e-23 >seq31 Length=344941 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || ||||| ||| ||||| || ||||| ||| | || || |||| || Sbjct 305285 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 305344 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || ||||| || || ||||| || || || || |||| | |||||| |||||| Sbjct 305345 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 305404 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||||| || || | ||| || || | ||||||||||| | ||||| ||||| Sbjct 305405 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 305464 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || ||||||||||| || |||||| Sbjct 305465 CCCCGTCAACGTCTTCACAAAGATCTGCATG 305495 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || ||||| ||| ||||| || ||||| ||| | || || |||| || Sbjct 324042 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 323983 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || ||||| || || ||||| || || || || |||| | |||||| |||||| Sbjct 323982 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 323923 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||||| || || | ||| || || | ||||||||||| | ||||| ||||| Sbjct 323922 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 323863 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || ||||||||||| || |||||| Sbjct 323862 CCCCGTCAACGTCTTCACAAAGATCTGCATG 323832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || ||| | || || |||| || | || ||||| ||||| Sbjct 305531 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 305590 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | |||||||| || |||| | ||||| || ||| ||| ||||||||||| | Sbjct 305591 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATT 305650 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | | || | ||| || || || | || || || || || ||||| |||||||| Sbjct 305651 ATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCAC 305710 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 305711 AAAGATCTGCAT 305722 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || ||||| || || ||| | || || |||| || | || ||||| ||||| Sbjct 323796 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 323737 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | |||||||| || |||| | ||||| || ||| ||| ||||||||||| | Sbjct 323736 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATT 323677 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | | || | ||| || || || | || || || || || ||||| |||||||| Sbjct 323676 ATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTTAATGTCTTCAC 323617 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 323616 AAAGATCTGCAT 323605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776259605880