Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 >seq1 Length=1523961 Score = 143 bits (158), Expect = 2e-29 Identities = 370/556 (67%), Gaps = 6/556 (1%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||||| || ||||| ||||||||||| |||||||| | ||| || || || || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | | ||||| ||||| ||||| || || || | ||| || || | |||| || |||||| Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGAT-GGAGCAGAAGGAACCC 465240 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 ||||| || ||||| || || || ||||| || | | || |||| |||| | | | Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || |||||| ||||| | || || | | ||||| || |||| Sbjct 465179 CGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 465120 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || || | || | | || || | |||| || || || || ||||| ||| Sbjct 465119 ATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAA-AAG 465061 Query 13442 CTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 | | |||| ||| || ||||| ||||| || || || ||||| || ||||| || | || Sbjct 465060 CGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCGC 465001 Query 13501 CTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 ||| | || || ||||| | | |||| || || | ||||||||| || ||||| | Sbjct 465000 CTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCCAT 464942 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 | || |||||||| || || | | |||||| || || |||||| || | || || Sbjct 464941 CGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCT 464882 Query 13620 TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAA 13679 | | ||| || | || | ||||| | || ||| ||||||||||| || Sbjct 464881 TGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTT 464822 Query 13680 CAGCCTTCTTATACAT 13695 | |||||||| ||||| Sbjct 464821 CGGCCTTCTTGTACAT 464806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980771694620