Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq31 154 3e-32 seq1 118 2e-21 >seq31 Length=344941 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || ||||| ||||| ||||||||||||||||| Sbjct 305721 ATACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCG 305780 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| | ||||||||| || || |||||||||||||| | | ||||||||||||| Sbjct 305781 CTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGA 305840 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||||||||| ||| || || || || | | ||| ||||| Sbjct 305841 GGAATACCTTCCTTATCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGACGGTTC 305899 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| || || ||||| || || || ||||||||| Sbjct 305900 GACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 305951 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || ||||| ||||| ||||||||||||||||| Sbjct 323606 ATACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCG 323547 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| | ||||||||| || || |||||||||||||| | | ||||||||||||| Sbjct 323546 CTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGA 323487 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||||||||| ||| || || || || | | ||| ||||| Sbjct 323486 GGAATACCTTCCTTATCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCGGACGGTTC 323428 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| || || ||||| || || || ||||||||| Sbjct 323427 GACGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCATT 323376 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || |||||||| || ||||| | || | ||| || || || || Sbjct 305520 TGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGC 305579 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | || ||||| ||||| || ||||| || || ||||||||| Sbjct 305580 TTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTT 305639 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||| ||||| || | | ||| ||||| || || | ||| |||||||| || || Sbjct 305640 TGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTT 305699 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||| || ||||| |||||||| Sbjct 305700 AATGTCTTCACAAAGATCTGCAT 305722 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || |||||||| || ||||| | || | ||| || || || || Sbjct 323807 TGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGC 323748 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | || ||||| ||||| || ||||| || || ||||||||| Sbjct 323747 TTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTT 323688 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||| ||||| || | | ||| ||||| || || | ||| |||||||| || || Sbjct 323687 TGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATAGTCTTCCCCGTT 323628 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||| || ||||| |||||||| Sbjct 323627 AATGTCTTCACAAAGATCTGCAT 323605 >seq1 Length=1523961 Score = 118 bits (130), Expect = 2e-21 Identities = 293/442 (66%), Gaps = 16/442 (4%) Strand=Plus/Plus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| |||| ||||| | || ||||| || || |||||||| || | ||| ||| Sbjct 464918 TCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCA 464977 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || || || || | ||||| || | || ||||||||||||||||| || || |||| Sbjct 464978 GTAGTGAAGTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCATTGAAA 465037 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 | ||||| || || ||||| || || || || || || || | || | ||| | Sbjct 465038 ACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGA 465097 Query 269034 AGAAAAGACTATTTTCTTC----TATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 || ||| | || || | ||| ||| || || |||| || || | Sbjct 465098 AG----GACCACTTGCTACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGT 465153 Query 269090 TGGGCTCTGAAATGGATAAACGATAGCGCGC-----CTTACGGAGAAAGGTTAGTTGCTT 269144 ||||| |||| ||| || | |||||| | || | ||| || | | || | Sbjct 465154 TGGGCATTGAAGTGGTGCGAC--TCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCAT 465211 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 |||| ||||| || || || ||||||||||| || || | | ||||| |||||||||| Sbjct 465212 TTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGA 465271 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTT 269264 | | || || ||||| || | | |||||| || ||| | || || | || ||||| | Sbjct 465272 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 465331 Query 269265 TACACTGCGACTTCGCTTGTTT 269286 | ||||| ||||| || || || Sbjct 465332 TGCACTGTGACTTTGCGTGCTT 465353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393826789480