Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq31 82.4 6e-11 >seq31 Length=344941 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/203 (71%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| || || || ||| || |||| ||||||||||| || | || Sbjct 305760 TCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAA 305819 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || |||||||| ||||| || | || |||||| ||| ||| |||||||| | | | Sbjct 305820 ATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTG 305879 Query 48654 ACGCTATGGTATCGGTAGACTC--CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 || || | |||| | || |||| | || || ||||| || |||||||| || || Sbjct 305880 TCG--ATCGAGTCGGACGGTTCGACGTC-CAAC-GTGATGGTCTTGCCGGTGAGTGTCTT 305935 Query 48712 CACAAAAATCTGCATCGTGTCTT 48734 ||| ||||||||||| |||||| Sbjct 305936 CACGAAAATCTGCAT--TGTCTT 305956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/203 (71%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| || || || ||| || |||| ||||||||||| || | || Sbjct 323567 TCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAA 323508 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || |||||||| ||||| || | || |||||| ||| ||| |||||||| | | | Sbjct 323507 ATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTG 323448 Query 48654 ACGCTATGGTATCGGTAGACTC--CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 || || | |||| | || |||| | || || ||||| || |||||||| || || Sbjct 323447 TCG--ATCGAGTCGGACGGTTCGACGTC-CAAC-GTGATGGTCTTGCCGGTGAGTGTCTT 323392 Query 48712 CACAAAAATCTGCATCGTGTCTT 48734 ||| ||||||||||| |||||| Sbjct 323391 CACGAAAATCTGCAT--TGTCTT 323371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249608460310