Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq31 131 2e-25 seq67 107 2e-18 seq119 84.2 2e-11 >seq31 Length=344941 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||||||||| || || ||||| || | ||| || ||||||| ||| | Sbjct 305508 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 305567 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| | | ||||||||||||||| || ||||| ||| Sbjct 305568 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 305627 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| ||||| ||| | ||| | | |||||||| | ||||| Sbjct 305628 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATA 305687 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||||||||||||||| Sbjct 305688 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 305722 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | |||||||||||| || |||||||| || | ||||| |||||| Sbjct 305724 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 305783 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| ||||| |||| || || | || ||||| |||||| Sbjct 305784 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 305843 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | ||| || ||| ||| | ||| | ||| | | |||||| Sbjct 305844 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 305903 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || || || || || ||||| || |||||||| Sbjct 305904 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 305950 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | |||||||||||| || |||||||| || | ||||| |||||| Sbjct 323603 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 323544 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| ||||| |||| || || | || ||||| |||||| Sbjct 323543 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 323484 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | ||| || ||| ||| | ||| | ||| | | |||||| Sbjct 323483 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 323424 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || || || || || ||||| || |||||||| Sbjct 323423 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAAATCTGCAT 323377 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||||||||| || || ||||| || | ||| || ||||||| ||| | Sbjct 323819 CGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA 323760 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| | | ||||||||||||||| || ||||| ||| Sbjct 323759 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTG 323700 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| ||||| ||| | ||| | | |||||||| | ||||| Sbjct 323699 TCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATA 323640 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||||||||||||||| Sbjct 323639 GTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 323605 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||||| | || ||||| |||| ||| || || Sbjct 305057 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 305116 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | | ||| |||||||||||||||||||| ||||| | Sbjct 305117 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 305176 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| | | | || ||| | | || || || | |||||||| || Sbjct 305177 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 305236 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||| ||||||||||| Sbjct 305237 GCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||||| | || ||||| |||| ||| || || Sbjct 324270 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 324211 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | | ||| |||||||||||||||||||| ||||| | Sbjct 324210 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 324151 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| | | | || ||| | | || || || | |||||||| || Sbjct 324150 GATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTT 324091 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||| ||||||||||| Sbjct 324090 GCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | |||||| ||||||| ||| ||| || Sbjct 305285 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 305344 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| | || || || | || |||||||||||||||||||| || || | Sbjct 305345 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 305404 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||| || | | | || ||| | | | || || || | || || ||||| Sbjct 305405 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 305464 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || ||||||||||||||||||| Sbjct 305465 CCCCGTCAACGTCTTCACAAAGATCTGCATGC 305496 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | |||||| ||||||| ||| ||| || Sbjct 324042 CACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTC 323983 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| | || || || | || |||||||||||||||||||| || || | Sbjct 323982 CAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCTTG 323923 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||| || | | | || ||| | | | || || || | || || ||||| Sbjct 323922 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 323863 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || ||||||||||||||||||| Sbjct 323862 CCCCGTCAACGTCTTCACAAAGATCTGCATGC 323831 >seq67 Length=206978 Score = 107 bits (118), Expect = 2e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || || ||||||| | | |||||||||||||||||| ||||| || Sbjct 178014 ATCTTCCAATTGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTT 178073 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||| ||||||| | | | |||| | | || ||||| | |||||| Sbjct 178074 GTCCTGGATCTTTTGCTTGACGTTGTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGAT 178133 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA-CAAC 95016 ||| || || ||||||||||| || ||||||||||| |||| |||| Sbjct 178134 GGTCTTGCCCGTAAGAGTTTTGACGAAGATCTGCAT-CTTATCAAC 178178 >seq119 Length=50977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || ||||||| || | ||||||||||| ||||| ||||| || Sbjct 37825 ATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTT 37766 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||||| | | | | ||| | | |||||||| | |||||| Sbjct 37765 GTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTGAT 37706 Query 94972 GGTTTTTCC 94980 |||||| || Sbjct 37705 GGTTTTACC 37697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289462871600