Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq47 206 4e-49 seq4 197 2e-46 seq39 161 2e-35 >seq47 Length=273717 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||||| | || ||||| || ||||||||||| |||||||||||||| || Sbjct 204895 GCTAAGCGTCATCGCAAGGTC-CTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 204837 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| ||||||| ||| |||| ||||| | Sbjct 204836 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAAC 204777 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| | | ||| || | ||| | || || || || Sbjct 204776 ACGTGGTGTCCTCAAGGTCTTCCTTGAAAACGTCATTCGTGACTCGGTCACGTACACGGA 204717 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||||||| |||||||| |||||||||| | || || || || Sbjct 204716 GCACGCGCGCCGAAAGACTGTCACCGCCATGGATGTCGTCTATGCGCTCAAGCGCCAGGG 204657 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 204656 CCGCACCCTCTACGGTTTCGGTGGTTAA 204629 >seq4 Length=990772 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||||| || ||||||||||| |||||||||||||| ||| Sbjct 460445 GCCAAGCGTCATCGCAAGGTGCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCATC 460386 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| ||||||||| |||| || ||| |||| ||||| | Sbjct 460385 CGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGCTTGATCTACGAAGAAACC 460326 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| ||||||| | | |||||||| ||| | || ||| || ||| Sbjct 460325 CGTGGTGTGCTCAAGGTCTTCCTTGAAAACGTTATCCGTGACTCGGTCACCTACACGGAG 460266 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| ||||| |||||||| ||||||| || | || || || ||| Sbjct 460265 CACGCGCGCCGAAAGACCGTCACTGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGGC 460206 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 460205 CGCACCCTTTACGGCTTCGGCGGTTAA 460179 >seq39 Length=301643 Score = 161 bits (178), Expect = 2e-35 Identities = 194/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || |||||||| || |||||||||||||| || Sbjct 240885 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAGGGGATCACCAAGCCAGCGAT 240943 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| ||||||||||| || |||||| || |||| || |||| ||||| | Sbjct 240944 TCGTCGACTGGCGCGTCGTGGTGGTGTAAAGCGTATCAGTGGACTGATCTACGAAGAAAC 241003 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || || ||| || || | |||| | | || || || Sbjct 241004 ACGTGGTGTGTTGAAGGTGTTTCTGGAGAATGTGATTCGTGATTCGGTGACGTACACGGA 241063 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| || || | |||||| | |||||||| ||||| |||||||| Sbjct 241064 GCATGCACGTCGAAAGACGGTGACGGCGATGGATGTAGTCTATGCGTTGAAGCGTCAAGG 241123 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 241124 TCGCACGCTTTATGGCTTTGG 241144 Score = 161 bits (178), Expect = 2e-35 Identities = 194/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || || |||||||| || |||||||||||||| || Sbjct 244771 GCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAGGGGATCACCAAGCCAGCGAT 244713 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| ||||||||||| || |||||| || |||| || |||| ||||| | Sbjct 244712 TCGTCGACTGGCGCGTCGTGGTGGTGTAAAGCGTATCAGTGGACTGATCTACGAAGAAAC 244653 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || || ||| || || | |||| | | || || || Sbjct 244652 ACGTGGTGTGTTGAAGGTGTTTCTGGAGAATGTGATTCGTGATTCGGTGACGTACACGGA 244593 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| || || | |||||| | |||||||| ||||| |||||||| Sbjct 244592 GCATGCACGTCGAAAGACGGTGACGGCGATGGATGTAGTCTATGCGTTGAAGCGTCAAGG 244533 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 244532 TCGCACGCTTTATGGCTTTGG 244512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074916564830