Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 199 5e-46 seq69 136 5e-27 >seq1 Length=1523961 Score = 199 bits (220), Expect = 5e-46 Identities = 413/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||||||| || || || || ||||||| || || || | ||| || ||||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || | Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 465239 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 33472 ||||||||||||| || || || ||||| || | || | || |||| | | |||| Sbjct 465238 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 465179 Query 33473 ---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 ||| | | |||||| |||||| ||||||||| | || || || || |||| Sbjct 465178 GCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 465122 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || ||| | | | || || || | ||||| | || || || ||||||| Sbjct 465121 CGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 465062 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | |||| ||| || ||||||||||||||||| ||||| |||||||| || || | | Sbjct 465061 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGCG 465002 Query 33650 CCTCGGTAATCTGTACTTCTGTAC--AAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 |||| | | || ||||| ||| ||| || | ||| | ||||| ||||| || || Sbjct 465001 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 464944 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 || ||| || || | || | | ||| | |||||| | |||||||| || Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || ||||| || |||||| ||| | || | |||||||||||| | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 33888 ATTTGGATT 33896 |||||| || Sbjct 464763 ATTTGGGTT 464755 >seq69 Length=184949 Score = 136 bits (150), Expect = 5e-27 Identities = 674/1061 (64%), Gaps = 28/1061 (3%) Strand=Plus/Minus Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 |||||||||||| || || || ||||| ||||||||||| | ||| | ||||| ||| Sbjct 89571 GAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATT 89512 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| | |||||||| || ||||| || || ||||| || | || || |||||||| Sbjct 89511 AGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCT 89452 Query 62822 G---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTAC 62878 | ||||| ||| | | || | || || |||| | ||| |||| || Sbjct 89451 GGTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGAC 89395 Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCA 62936 ||| || || |||| || |||| || || || || || || | | | || | Sbjct 89394 AAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTG 89337 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | | | |||| ||| | ||||| | ||||| || || ||||| ||||| Sbjct 89336 TACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTC 89277 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| || || |||||||| || || ||| | || || || ||||| ||||||| Sbjct 89276 GACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCG 89217 Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT- 63115 || | ||| || ||| | | | ||||| || | | | || | || Sbjct 89216 TCCAAAATGGCGAACCACAATTGTTGCGCCTTGAT----GGTCTTGCGGGCCAAGCCCTG 89161 Query 63116 ---TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 |||||| || ||||| ||||| || || ||||| | | || |||| Sbjct 89160 GGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGT 89101 Query 63173 ACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||| || || | || || |||||| |||| | | ||| || ||||| || Sbjct 89100 CGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAAC 89043 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 | ||| || ||||| | || ||| ||||| | | | ||| || || || | Sbjct 89042 AAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTGA 88983 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 ||||| | | ||| |||||| | | | || | ||||||||| ||||| || || || Sbjct 88982 TTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCA 88923 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | || || ||| || || ||||| | ||| | ||| |||| ||| | || Sbjct 88922 AACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACA 88863 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 | |||||| || | ||||||||| || | ||||| |||||| ||| ||||| | Sbjct 88862 CGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGATGTAGCTATTCGTC 88803 Query 63471 GCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 || ||||| || || |||| || || ||||||||| || ||||| |||||| Sbjct 88802 GCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGCGC 88745 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 || | || | ||||| || || ||||| || ||| || |||| | || |||| Sbjct 88744 ATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAAC 88685 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | ||||| ||| | || || || || ||||| | || || | |||||||| | Sbjct 88684 ACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGA 88625 Query 63649 ACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 | | || | ||| | |||||||||| | | ||||| || ||| Sbjct 88624 AGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTATGG 88566 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 88565 ATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944786079600