Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq69 286 9e-72 >seq69 Length=184949 Score = 286 bits (316), Expect = 9e-72 Identities = 1118/1738 (64%), Gaps = 55/1738 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| |||||||| ||| | |||||||| ||| | || |||||| ||| | | Sbjct 88525 GAACGACCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAG 88584 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAA 363565 | | |||| || ||| || | | || |||| || |||||||||||||| |||| Sbjct 88585 CTGGTGCTTGAGACGTATGAG--TACATGTCGCTCTCGTTCTTCACGCACGCCACACCAA 88642 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CTAAAAATG 363624 || ||| || || || || | ||||| ||||||| || |||||| | ||| Sbjct 88643 CACTGTTTAACGCAGGTACACCACGGCCACAACTGTCTTCGTG-TTTCTTATTGGCCATG 88701 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 | |||||||| || ||||| || | ||||| || ||| | || || || |||||| Sbjct 88702 CAAGACGATTCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAG 88761 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 ||||| || || || | || ||||| |||| || ||| || ||||| ||| Sbjct 88762 TGGGCAGGGGGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTACATCCGC 88821 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || ||| || || || || | || || ||| | |||||||| | | ||||| Sbjct 88822 GGTACAAATGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCT 88881 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | ||||| || || ||||| || |||||||||||| ||||||| || ||| | ||||| Sbjct 88882 CGTTACGTTGATCAAGGTGGTGGCAAGCGCAAAGGGTCGTTTGCAATCTATTTGGAGCCG 88941 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATT 363923 |||||||| | |||||||| || || | |||| || ||||| || | | || Sbjct 88942 TGGCATGCCGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAA---TGAACTT 88998 Query 363924 --GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 ||||||||||||||||| || || | ||| | | || || |||||||| ||| Sbjct 88999 CATCGTGCACGTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTG 89058 Query 363982 GAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 || || || || ||| || || ||||| | ||| | ||||| | ||| Sbjct 89059 GAAGCCAACGGCGAG---TGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGAC 89115 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 |||||||| || | | || | ||| ||||| ||| | |||| ||| || Sbjct 89116 TGCTGGGGTGATGAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCCCGC 89175 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 ||||| || || || | | ||||| ||||| |||| | ||||| || || || Sbjct 89176 AAGACCATCAAGGCGCAACAATTGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGC 89235 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 ||||| || ||| | ||||| ||| | ||||| |||||||| || ||||| || | || Sbjct 89236 ACACCTTACATGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAAAACTTGGGC 89295 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 || |||| || ||| | || ||| | | || ||||| | ||||| Sbjct 89296 ACTATTCGCTCCAGTAACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTC 89355 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGAC 364338 || || || ||| | ||||| || || || | ||||| | ||||| ||| || Sbjct 89356 GCGGTGTGCAACTTGGCGTCCATTGCACTGTCCAAATTTGTCGACAATGGTGTGTTTAAC 89415 Query 364339 CACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGAC 364398 ||| | || || || | || | || || | ||||| ||||||| || || Sbjct 89416 TTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCATTGAT 89475 Query 364399 AAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 | || || ||||| || || |||||| |||| |||||| | || |||||||| | ||| Sbjct 89476 ATCAACTACTATCCGATCCCAGAAGCCAAGCGATCTAATCTACGACATCGCCCTGTGGGT 89535 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGA---TTCG 364515 ||||||| || || | ||||| | ||||| | | | | | || || | | Sbjct 89536 ATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAAAGTGAG 89595 Query 364516 CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 | | || || | | || ||| | || |||||||| |||| | || || ||| Sbjct 89596 C---AAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATGGAA 89652 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 || || || | ||||| | || ||| ||||| ||||| |||||| | Sbjct 89653 GCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCTGTG 89712 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATCTGTCCGATGGAAC 364692 |||| | |||||||||||| | ||| |||||| | |||||| | ||| | Sbjct 89713 AGCAAGGGCATCTTCCAGTTTGATATGTGGGGTGTCACTCCAACATCTGGTCTCTGGGAT 89772 Query 364693 TGGGATACGCTACGTTCCAACGTTAAG-----AAGCATGGTACTCGCAACTCCCTCGTTA 364747 ||| ||| | || || | ||| || |||||| ||||||||||| | Sbjct 89773 TGG-----GCTGCATTGAAAGCTCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGTTGT 89827 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 ||||||||||| ||||| || ||||| |||||| | || || || || | | | || | Sbjct 89828 TGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTGAGC 89887 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 | || || ||| | || || || || || | || |||||| || | || || | Sbjct 89888 CATTCACGTCCAACATGTACAATCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCAACA 89947 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG-----AA 364922 |||| || | ||||| || ||| | || | || |||| | ||| | || Sbjct 89948 AGTATCTCATGAAGGAGCTCATCGAACTTGGTATCTG----GACA-CCTGAGGTGCGCAA 90002 Query 364923 CTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC-CAGGATTTCCAGAAGATCTGA 364981 | | ||| | | ||| || ||||| || | | | || |||| || | | | Sbjct 90003 CCAAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTCGA-TTCCTGATGCAATCA 90061 Query 364982 AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTC-TCATTGATATGGCGG 365038 || | |||||||| || |||||||| || || || || | | ||| |||| | Sbjct 90062 AGGAAAAGTACAAAACAGTGTGGGAAAT---CAAGCAAAAGGTCGTGTTAGATTTGGCAG 90118 Query 365039 CCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 | ||||| ||||| | |||||||| ||||||||| | ||||| ||| | | || | Sbjct 90119 CTGATCGTGGTGCCTACATCTGTCAAAGCCAGTCGCTGAACGTGCACATCGCCGACCCGA 90178 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | ||||| ||||| || |||| |||||| || |||||||| || Sbjct 90179 CGGTGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACTTAAGACCGG 90236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348423242420