Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq31 113 3e-20 seq25 82.4 5e-11 >seq31 Length=344941 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | | ||| | |||||| || | || ||||||||||||||||||||| Sbjct 305037 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 305096 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| ||| |||| || | || || || ||||| || || ||||||||||| | Sbjct 305097 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 305156 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| || || |||||||| || | | || || | ||| Sbjct 305157 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 305216 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || ||||| || |||||||| |||||||| Sbjct 305217 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 305266 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | | ||| | |||||| || | || ||||||||||||||||||||| Sbjct 324290 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 324231 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| ||| |||| || | || || || ||||| || || ||||||||||| | Sbjct 324230 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 324171 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| || || |||||||| || | | || || | ||| Sbjct 324170 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 324111 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || ||||| || |||||||| |||||||| Sbjct 324110 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 324061 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||| || || || ||||||||| || || || || Sbjct 305266 TACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGC 305325 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || || || ||||| || || || | || |||||||| | | Sbjct 305326 TCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAG 305385 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || ||||||||||||||||| | | || || || | Sbjct 305386 GAATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCA 305445 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| ||||| |||||||| || ||||| || ||||||||| Sbjct 305446 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 305495 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||| || || || ||||||||| || || || || Sbjct 324061 TACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGC 324002 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || || || ||||| || || || | || |||||||| | | Sbjct 324001 TCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAG 323942 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || ||||||||||||||||| | | || || || | Sbjct 323941 GAATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCA 323882 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| ||||| |||||||| || ||||| || ||||||||| Sbjct 323881 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 323832 >seq25 Length=441456 Score = 82.4 bits (90), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||||||||||| || || ||||||||||| || || ||||| || || Sbjct 69253 ACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 69312 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC-GGAGG 38208 || || |||| || ||||| || || ||||| || || || || ||||| ||||| Sbjct 69313 CAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 69372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945934527610