Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 seq69 136 5e-27 >seq1 Length=1523961 Score = 190 bits (210), Expect = 3e-43 Identities = 413/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||||||| || || || || ||||| | || || || | ||| || | ||| || || | Sbjct 465358 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 465299 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| || |||||||| || | ||| || ||||| ||| || || || Sbjct 465298 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGA-GCAGAAGGAACCC 465240 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 32828 |||||||| ||||| || || |||||||| || | || | || |||| | | ||| Sbjct 465239 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 465180 Query 32829 CT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | ||| | | |||||| |||||| ||||||||| | || || || || || Sbjct 465179 CGCGAGTC--GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTT 465123 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || |||||| | | | || || || | ||||| | ||||| ||||||||| Sbjct 465122 TCGATAGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 465063 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || |||| ||| || ||||||||||||||||| || || |||||||| ||||| | Sbjct 465062 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCAATCTGGAATCCGTAAAAGCAGCGC 465003 Query 33006 GCCTCGGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 ||||| | | || ||||| ||| |||| || || | ||||| ||||| || || Sbjct 465002 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 464944 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 || ||||| ||||| |||||||| || || || || || | ||||| || | Sbjct 464943 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 464884 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 || ||| || || | || | | ||||| |||||| | |||||||| || Sbjct 464883 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 464824 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 || ||||| || ||||| ||| | || | | ||| ||||| || | ||||||| Sbjct 464823 TTCGGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 464764 Query 33245 ATTTGGATT 33253 |||||| || Sbjct 464763 ATTTGGGTT 464755 >seq69 Length=184949 Score = 136 bits (150), Expect = 5e-27 Identities = 711/1122 (63%), Gaps = 32/1122 (3%) Strand=Plus/Minus Query 62498 GTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAG 62557 ||||| || || | ||| || | ||| |||||| | || || || || | | | Sbjct 89630 GTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATG 89571 Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 ||||||||||| || || || ||||| ||||||||||| | ||| | ||||| |||| Sbjct 89570 AGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATTA 89511 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || | |||||||| || ||||| || || ||||| || | || || ||||||||| Sbjct 89510 GATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTG 89451 Query 62678 ---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62734 ||||| ||| | | || | || || |||| | ||| |||| ||| Sbjct 89450 GTCACAAT--CTTCG-TGATTTCGTAGAGCTTCTGAAAGTTAAACACACCATTGTCGACA 89394 Query 62735 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCAT 62792 || || || ||||| || |||| || || || || || || | | | || | | Sbjct 89393 AATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGAT--GTGT 89336 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | | | |||| ||| | ||||| | || || || || ||||| ||||| Sbjct 89335 ACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCG 89276 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 ||| || || |||||||| || || ||| | || || || ||||| ||||||| | Sbjct 89275 ACTTGCGATTGCATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGT 89216 Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG------TATCTCTTTT 62966 | | ||| || ||| | | | |||| | || | ||| | | || Sbjct 89215 CCAAAATGGCGAACCACAATTGTTGCGCCT---TGATGGTCTTGCGGGCCAAGCCCTGGG 89159 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | |||||| || ||||| ||||| || || ||||| | | ||| |||| Sbjct 89158 C---TTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAG 89102 Query 63027 GACATTCATCCGGACACATCAACGA--CCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||||| || || | || || |||||| |||| | | ||| || ||||| || Sbjct 89101 TCGCTTCATTAGGGCAGA--AAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAA 89044 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||| || ||||| | || ||| ||||| | | | ||| || || || Sbjct 89043 CAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTG 88984 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| | | ||| |||||| | | | || | ||||||||| ||||| || || || Sbjct 88983 ATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGC 88924 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | || || ||| || || ||||| | ||| | ||| |||| ||| | || Sbjct 88923 AAACGACCCTTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACAC 88864 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 | |||||| || | |||||| ||||| || ||||| || || ||| ||||| | Sbjct 88863 ACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCGCGGATGTAGCTATTCGT 88804 Query 63325 GGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 || ||||| || || |||| || || ||||||||| || ||||| ||||| Sbjct 88803 CGCGCGAATGTTGTGCATGCTGAT--GCCGATACCCCCTGCCCACTTGGAGATGCATGCG 88746 Query 63383 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 63442 ||| | || | || || || |||||||| ||| ||| || |||| | || ||| Sbjct 88745 CATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAA 88686 Query 63443 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTA 63502 || ||||| ||| | || || || || ||||| | || || | ||||| || Sbjct 88685 CACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTG 88626 Query 63503 AACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 || | || | ||| | |||||||||| | | ||||| || ||| Sbjct 88625 AAGAACGAGAGCGACATGTA-CTCATACGTCTCAAGCACCAGCTTGATATCTTCTTTATG 88567 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || ||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 88566 GATGCCTACAGCGACACGCATGATCATTTGCTGCGGTCGTTC 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629544676000