Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq31 134 1e-26 >seq31 Length=344941 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| | || || | || |||||| | || Sbjct 305494 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 305435 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || |||||||||||||| || || ||||| ||||| || || ||| Sbjct 305434 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 305375 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || || ||||||| |||||| || |||| || || Sbjct 305374 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 305315 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || ||||| Sbjct 305314 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCT 305283 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| | || || | || |||||| | || Sbjct 323833 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 323892 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || |||||||||||||| || || ||||| ||||| || || ||| Sbjct 323893 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 323952 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || || ||||||| |||||| || |||| || || Sbjct 323953 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 324012 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || ||||| Sbjct 324013 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCT 324044 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| | || Sbjct 305266 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 305207 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || ||||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 305206 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 305147 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || | ||||| | ||| ||| || | ||||||||| Sbjct 305146 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 305087 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || | || || ||||| Sbjct 305086 ATTCAAAAGGAATCGACATTGCACTTGGTGCT 305055 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| | || Sbjct 324061 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 324120 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || ||||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 324121 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 324180 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || || | ||||| | ||| ||| || | ||||||||| Sbjct 324181 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 324240 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || | || || ||||| Sbjct 324241 ATTCAAAAGGAATCGACATTGCACTTGGTGCT 324272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326362832650